scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP43_110_X14Y8__gate377 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,126 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_111_X8Y6__gate285 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,057 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_115_X4Y8__gate334 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,931 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_116_X14Y4__gate264 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 862 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_116_X3Y4__gate364 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,069 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_116_X4Y4__gate365 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,910 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_118_X13Y5__gate268 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,309 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_119_X9Y8__gate280 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,583 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_122_X12Y8__gate283 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,415 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_124_X10Y8__gate281 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 265 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_125_X5Y7__gate351 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,934 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_128_X16Y7__gate375 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,104 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_131_X13Y4__gate265 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,633 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_132_X13Y1__gate253 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,258 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_132_X14Y1__gate252 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 820 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_137_X10Y3__gate296 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 282 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_137_X9Y3__gate297 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 4,305 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_139_X1Y7__gate348 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,171 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_142_X5Y1__gate319 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,453 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_142_X6Y1__gate320 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 489 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_143_X1Y2__gate352 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 109 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_143_X2Y2__gate353 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 969 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_144_X15Y1__gate254 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,267 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_144_X16Y1__gate255 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,678 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_147_X6Y6__gate347 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 322 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_149_X10Y6__gate287 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 544 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_149_X10Y6__gate288 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 468 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_150_X5Y3__gate315 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,342 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_150_X6Y3__gate316 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 206 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_157_X4Y5__gate369 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 688 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_15_X1Y9__gate337 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,396 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_168_X10Y5__gate305 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,908 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_170_X3Y3__gate360 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,024 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_170_X4Y3__gate361 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 589 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_172_X10Y2__gate293 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 204 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_172_X9Y2__gate292 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,053 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_173_X2Y8__gate332 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,802 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_17_X11Y4__gate302 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,059 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_17_X12Y4__gate303 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 521 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_180_X5Y2__gate311 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,619 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_180_X6Y2__gate312 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 108 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_193_X9Y7__gate274 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,659 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_194_X11Y7__gate276 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 933 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_195_X11Y6__gate289 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,217 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_197_X4Y9__gate339 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 825 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_199_X8Y5__gate329 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,943 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_19_X15Y2__gate258 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,520 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_19_X16Y2__gate259 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 276 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_1_X1Y8__gate331 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,907 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_200_X9Y6__gate286 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,332 T1T2T3T1T2T3T1T2T3 Curated