scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP43_201_X14Y5__gate269 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,948 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_202_X9Y5__gate304 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,976 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_205_X3Y6__gate344 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,298 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_207_X1Y6__gate342 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,131 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_209_X11Y1__gate310 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,962 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_209_X12Y1__gate291 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 285 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_213_X7Y7__gate272 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,638 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_21_X3Y5__gate368 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,743 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_221_X2Y7__gate349 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,280 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_222_X7Y2__gate313 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,193 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_222_X8Y2__gate314 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 107 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_225_X2Y9__gate338 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,904 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_226_X6Y9__gate341 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,282 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_22_X12Y6__gate290 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,123 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_230_X11Y5__gate306 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,440 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_233_X13Y7__gate372 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,139 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_235_X11Y2__gate294 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,477 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_235_X12Y2__gate295 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,968 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_23_X15Y7__gate374 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,607 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_241_X7Y3__gate317 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,041 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_241_X8Y3__gate318 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 51 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_242_X5Y6__gate346 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,063 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_243_X13Y3__gate260 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,947 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_243_X14Y3__gate261 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 780 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_244_X3Y1__gate356 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,939 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_244_X4Y1__gate357 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 108 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_245_X6Y5__gate327 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,628 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_246_X2Y6__gate343 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,738 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_248_X8Y8__gate279 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 798 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_250_X1Y3__gate358 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,457 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_250_X2Y3__gate359 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,061 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_252_X6Y7__gate330 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,647 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_260_X10Y4__gate300 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,829 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_260_X9Y4__gate301 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,590 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_266_X7Y8__gate278 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,860 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_269_X5Y9__gate340 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,942 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_26_X16Y5__gate271 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,592 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_270_X3Y8__gate335 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,080 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_270_X6Y8__gate336 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,303 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_271_X11Y8__gate282 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,256 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_272_X11Y3__gate298 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,778 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_272_X12Y3__gate299 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 673 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_278_X3Y2__gate354 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,430 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_278_X4Y2__gate355 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,089 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_281_X8Y7__gate273 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,198 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_32_X4Y6__gate345 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,914 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_34_X12Y5__gate307 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,451 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_3_X13Y6__gate378 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,563 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_43_X5Y5__gate326 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,250 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_47_X16Y4__gate267 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,635 T1T2T3T1T2T3T1T2T3 Curated