scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 1,128 matches · sample view
Reset
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Search: breast × 1,128 matches 1,128 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35122013__IMC__MB-0496__core1__image380 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 101 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0498__core1__image240 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,338 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0500__core1__image233 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 642 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0500__core1__image234 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 76 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0501__core1__image222 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,085 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0502__core1__image236 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,284 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0503__core1__image232 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 709 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0504__core1__image217 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 451 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0505__core1__image114 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 417 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0508__core1__image208 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,226 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0510__core1__image259 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 537 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0511__core1__image219 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 695 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0512__core1__image86 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 282 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0513__core1__image244 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,319 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0515__core1__image235 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 704 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0516__core1__image231 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,086 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0518__core1__image216 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 662 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0519__core1__image209 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,059 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0520__core1__image25 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,393 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0521__core1__image324 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,206 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0523__core1__image144 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,094 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0524__core1__image402 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 153 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0525__core1__image170 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,346 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0526__core1__image230 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,661 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0527__core1__image484 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,167 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0528__core1__image541 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,139 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0529__core1__image399 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 727 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0530__core1__image348 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,134 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0531__core1__image441 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 607 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0532__core1__image125 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,109 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0536__core1__image284 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,023 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0537__core1__image488 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,110 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0538__core1__image121 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 654 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0538__core2__image150 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,384 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0542__core1__image160 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,599 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0543__core1__image522 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 862 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0544__core1__image168 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,489 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0545__core1__image356 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 798 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0547__core1__image46 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 267 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0547__core1__image486 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0548__core1__image18 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 633 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0549__core1__image188 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 729 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0549__core2__image547 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 560 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0552__core1__image8 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,072 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0553__core1__image508 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 745 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0554__core1__image290 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 138 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0555__core1__image41 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 172 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0555__core1__image64 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 230 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0556__core1__image377 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 517 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0557__core1__image299 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 880 T1T2T3T1T2T3T1T2T3 Curated