scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
381 Samples
SearchFiltered
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 381 matches · sample view
Reset
Columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Search: BRCA_31959985 × 381 matches 381 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
BRCA_31959985__IMC__BaselTMA_SP41_220_X10Y5__gate076 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,569 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_224_X3Y7__gate113 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,593 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_227_X9Y6__gate054 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,631 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_228_X7Y3__gate065 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 263 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate045 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 842 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate061 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,602 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_234_X10Y6__gate057 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,319 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_237_X16Y6__gate039 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,765 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_238_X7Y1__gate067 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,106 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_238_X8Y1__gate071 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,047 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate025 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,734 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate084 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_239_X12Y3__gate001 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 73 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_247_X13Y6__gate032 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,687 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_249_X3Y9__gate124 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,164 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_24_X5Y2__gate098 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,143 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_24_X6Y2__gate062 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,162 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_254_X11Y6__gate060 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,909 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_255_X12Y8__gate040 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,840 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_256_X9Y7__gate053 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,112 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_257_X3Y1__gate092 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,682 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_259_X10Y3__gate078 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 3,676 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_263_X1Y4__gate102 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 324 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_263_X2Y4__gate085 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 684 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_267_X13Y8__gate030 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,867 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_268_X6Y7__gate044 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,382 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_274_X13Y1__gate008 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 528 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_274_X14Y1__gate013 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 599 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_276_X9Y8__gate052 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,068 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_277_X12Y6__gate042 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 664 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_280_X9Y5__gate072 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,909 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_282_X1Y3__gate108 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,406 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_282_X2Y3__gate086 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 89 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_282_X2Y3__gate087 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 68 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_283_X2Y6__gate111 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,534 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_284_X7Y2__gate066 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,236 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_284_X8Y2__gate070 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 108 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_2_X2Y8__gate109 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,688 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_31_X15Y2__gate017 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,312 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_31_X16Y2__gate022 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 207 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_33_X14Y6__gate035 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,556 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_37_X7Y6__gate048 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,872 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_38_X4Y7__gate116 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,412 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_39_X1Y7__gate120 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,524 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_40_X16Y7__gate038 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,662 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_41_X11Y8__gate058 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,223 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_42_X14Y5__gate009 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,719 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_44_X2Y7__gate110 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,187 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_45_X3Y3__gate090 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,949 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_45_X4Y3__gate094 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 87 T1T2T3T1T2T3T1T2T3 Curated