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single-cell spatial atlas resource
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Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset
Sample
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Table
250 Samples
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Study ID
HNSCC_41616773
Modality
Spatial transcriptomics
Technique
Xenium
Organ
breast
Disease state
primary cancer
Disease detail
breast cancer
Filter scope
250 matches · sample view
Applied
Dataset
ASD_42288509 · MERFISH / MERSCOPE
10x Genomics Atera showcase
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion
BrainTumor_36725935 · IMC / Imaging Mass Cytometry
BRCA_31959985 · IMC / Imaging Mass Cytometry
BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging
BRCA_35122013 · IMC / Imaging Mass Cytometry
CastlemanDisease_40593805 · Xenium
CervicalCancer_CmTSA_41807362
cHL_41923627 · CosMx SMI / NanoString SMI
cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging
cHL_41923627 · PCF / CODEX / PhenoCycler Fusion
CML_41592325 · PCF / CODEX / PhenoCycler Fusion
Bruker CosMx 1k FFPE showcase
Bruker CosMx 64-protein FFPE showcase
Bruker CosMx 6k FFPE showcase
Bruker CosMx WTx FFPE showcase
CRC_32763154 · PCF / CODEX / PhenoCycler Fusion
CRC_40189697 · IMC / Imaging Mass Cytometry
CRC_41986711 · CosMx SMI / NanoString SMI
CRC_42167227 · CosMx SMI / NanoString SMI
CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI
DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion
DKD_42056516 · CosMx SMI / NanoString SMI
DKD_42056516 · Xenium
DLBCL_41120574 · CosMx SMI / NanoString SMI
DLBCL_41874448 · CosMx SMI / NanoString SMI
DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion
GBM_40972572 · CosMx SMI Protein
HCC_39304772 · PCF / CODEX / PhenoCycler Fusion
HCC_39327501 · PCF / CODEX / PhenoCycler Fusion
HCC_39455893 · IMC / Imaging Mass Cytometry
HCC_39965889 · PCF / CODEX / PhenoCycler Fusion
LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI
HGSC_39179931 · CosMx SMI / NanoString SMI
HGSC_39179931 · MERFISH / MERSCOPE
HGSC_39179931 · Xenium
HGSOC_38570491 · CosMx SMI / NanoString SMI
HNSCC_41616773 · Other ST
HNSCC_41616773 PCF discovery cohort
HNSCC_41616773 PCF healthy lymph node cohort
HNSCC_41616773 PCF validation cohort
IBD_42049732 · CosMx SMI / NanoString SMI
LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI
IgAN_38898271 · Xenium
Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion
Intestine_39843748 · MERFISH / MERSCOPE
Intestine_39843748 · Xenium
Liver_41986723 · MERFISH / MERSCOPE
LUAD_36725934 · IMC / Imaging Mass Cytometry
Melanoma_35363543 · IMC / Imaging Mass Cytometry
Melanoma_40148341 · CosMx SMI / NanoString SMI
Melanoma_40457060 · CosMx SMI / NanoString SMI
Melanoma_41916292 · CyCIF / Cyclic IF
MERFISH 500-plex Vizgen showcase
MERFISH 815-plex Vizgen showcase
MERFISH 960-plex Vizgen showcase
MIBC_42126225 · Xenium
Neocortex_39779846 · MERFISH / MERSCOPE
Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion
NormalSkin_41872488 · MERFISH / MERSCOPE
NSCLC_38242124 · IMC / Imaging Mass Cytometry
NSCLC_40220761 · CosMx SMI / NanoString SMI
NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion
Oral_41663813 · Xenium
OSCC_41707652 · IMC / Imaging Mass Cytometry
PDAC_39227743 · CosMx SMI / NanoString SMI
PDAC_40269162 · CosMx SMI / NanoString SMI
PDAC_41916312 · Xenium
PulmonaryFibrosis_39901013 · Xenium
RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI
SCN_41720090 · MERFISH / MERSCOPE
SCN_41720090 · Visium HD
SPATCH_41107232 · CosMx SMI / NanoString SMI
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics
SPATCH_41107232 · Xenium
SpinalCord_38513664 · ISS / In Situ Sequencing
SpinalCord_38513664 · Xenium
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
UlcerativeColitis_38374043 CosMx 960-plex Run 1
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
10x Genomics Visium HD showcase
10x Genomics Visium HD p2 TissueArray showcase
10x Genomics Visium HD p2 TMA showcase
10x Genomics Visium HD p2 WholeSlide showcase
10x Genomics Xenium Prime 5K showcase
Xenium Human Brain Gene Expression Panel showcase
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Xenium Human Immuno-Oncology Profiling Panel showcase
Xenium Human Lung Gene Expression Panel showcase
Xenium Human Multi-Tissue and Cancer Panel showcase
Organ
Brain (4)
Spinal cord (6)
Head and neck (44)
Lymphoid tissue (22)
Musculoskeletal (1)
Skin (3)
Breast (19)
Lung (54)
Liver (4)
Adrenal gland
Kidney (20)
Bladder (5)
Pancreas (5)
Small intestine (16)
Large intestine (3)
Ovary (39)
Prostate (1)
Uterus/Cervix (1)
Bone marrow (2)
Heart (1)
Disease state
Healthy/control (58)
Primary cancer (88)
Metastatic cancer
Non-cancer disease (104)
Disease detail
Acute lymphoid leukemia (1)
Acute myeloid leukemia
Adenosquamous lung carcinoma
Alzheimer's disease (1)
Astrocytoma (Primary)
Astrocytoma (Progression from grade II/III)
Astrocytoma (Recurrent)
Autism spectrum disorder cortical organoid model
B-cell non-Hodgkin lymphoma
Brain metastasis
Brain metastasis from Bladder/urinary tract
Brain metastasis from Breast
Brain metastasis from extremity
Brain metastasis from Intestine
Brain metastasis from Lung
Brain metastasis from Ovary/Fallopian tube
Brain metastasis from Skin
Brain metastasis from Stomach/upper GI
Brain metastasis from trunk
Breast cancer (1)
Breast cancer (CCH/DCIS, ER+/PR+/HER2-1+) (1)
Breast cancer (DCIS, ER+/PR+/HER2-2+) (2)
Breast cancer (DCIS, ER-/PR-/HER2-2+) (1)
Breast cancer (DCIS, HER2-1+) (2)
Breast cancer (DCIS, HER2-2+) (1)
Breast cancer (DCIS, HER2-3+) (1)
Breast cancer (ductal carcinoma in situ)
Breast cancer (ductal carcinoma in situ, HER2-1+)
Breast cancer (IDC, ER+/PR+/HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-2+) (1)
Breast cancer (IDC, HER2-) (1)
Breast cancer (invasive ductal carcinoma) (2)
Breast cancer (invasive ductal carcinoma, ductal carcinoma in situ) (2)
Breast cancer (invasive lobular carcinoma) (2)
Castleman disease (18)
Cervical Cancer (1)
Cervical cancer
Cervical cancer (squamous cell carcinoma)
Chronic myeloid leukemia bone marrow
Classical Hodgkin lymphoma
Colorectal cancer
Colorectal cancer (adenocarcinoma) (3)
Cutaneous leishmaniasis
Developing healthy lung
Diffuse large B-cell lymphoma
Experimental autoimmune encephalomyelitis (multiple sclerosis model)
Follicular lymphoid hyperplasia (1)
Glioblastoma (2)
Glioblastoma (Primary)
Glioblastoma (Progression from grade II/III)
Glioblastoma (Recurrent)
Glioblastoma (Residual)
Glioma, IDH status unknown (Primary)
Head and neck squamous cell carcinoma
Healthy/control kidney (3)
Healthy/control lung (10)
Healthy/normal skin
Healthy adult human intestine
Healthy colon control
Healthy human (11)
Healthy intestine (16)
Hepatocellular carcinoma (3)
High-grade serous carcinoma (33)
IgA nephropathy (1)
Inflammatory bowel disease
Intrahepatic cholangiocarcinoma
Kidney cancer
Kidney cancer (papillary renal cell carcinoma) (1)
Kidney cancer (renal cell carcinoma) (1)
Kidney disease (AA amyloid) (2)
Kidney disease (C3GN) (1)
Kidney disease (CKD)
Kidney disease (DKD) (8)
Kidney disease (DKD+FSGS)
Kidney disease (DM)
Kidney disease (DM/HTN)
Kidney disease (FSGS)
Kidney disease (HTN)
Kidney disease (IgA) (1)
Kidney disease (MN) (1)
Kidney disease (TMA)
Large-cell/other non-small cell lung cancer
Lung adenocarcinoma
Lung cancer (2)
Lung cancer (invasive acinar adenocarcinoma) (4)
Lung cancer (invasive adenocarcinoma) (1)
Lung squamous cell carcinoma
Lymphoid tissue metastasis
Lymphoid tissue metastasis from acral
Lymphoid tissue metastasis from extremity
Lymphoid tissue metastasis from head/neck
Lymphoid tissue metastasis from Oral cavity
Lymphoid tissue metastasis from trunk
Melanocytic nevus / non-malignant skin control
Melanoma (1)
Multiple sclerosis (4)
Muscle-invasive bladder cancer (5)
Neuroblastoma
Non-small cell lung cancer (1)
Normal/healthy bone marrow control
Normal/healthy breast tissue control
Normal/healthy heart control
Normal/healthy hippocampus brain tissue
Normal/healthy kidney control (1)
Normal/healthy liver control
Normal/healthy pancreas control
Normal/healthy suprachiasmatic nucleus brain tissue
Normal/healthy tonsil control
Normal brain cortex
Normal developing human neocortex
Oral health (15)
Oral squamous cell carcinoma
Organ-specific lymph-node control/no cancer
Organ-specific spinal-cord control/no cancer (2)
Other non-small cell lung cancer
Ovarian cancer (2)
Ovarian cancer (adenocarcinoma) (1)
Ovarian cancer (clear cell adenocarcinoma)
Ovarian cancer (papillary serous carcinoma) (3)
Pancreatic cancer
Pancreatic ductal adenocarcinoma (4)
Periodontitis (29)
Prostate cancer
Prostate cancer (adenocarcinoma) (1)
Pulmonary fibrosis / interstitial lung disease (cHP) (4)
Pulmonary fibrosis / interstitial lung disease (CPFE) (1)
Pulmonary fibrosis / interstitial lung disease (CTD-ILD) (2)
Pulmonary fibrosis / interstitial lung disease (ILD) (6)
Pulmonary fibrosis / interstitial lung disease (IPAF) (2)
Pulmonary fibrosis / interstitial lung disease (IPF) (16)
Pulmonary fibrosis / interstitial lung disease (NSIP) (2)
Pulmonary fibrosis / interstitial lung disease (Sarcoidosis) (2)
Reactive Follicular Hyperplasia
Reactive follicular hyperplasia (1)
Reactive lymph node (1)
Rheumatoid arthritis (active)
Rheumatoid arthritis (remission)
Skin cancer
Skin metastasis
Skin metastasis from extremity
Skin metastasis from head/neck
Skin metastasis from trunk
Triple-negative breast cancer
Ulcerative colitis
Ulcerative colitis (post-vedolizumab, non-responder)
Ulcerative colitis (post-vedolizumab, responder)
Ulcerative colitis (pre-vedolizumab, non-responder)
Ulcerative colitis (pre-vedolizumab, responder)
Ulcerative colitis (vedolizumab-treated)
Uterine cancer
Technique
Atera
CmTSA
CosMx SMI / NanoString SMI
CosMx SMI Protein
CyCIF / Cyclic IF
IMC / Imaging Mass Cytometry
ISS / In Situ Sequencing
MERFISH / MERSCOPE
MIBI-TOF / Multiplexed Ion Beam Imaging
Other ST
PCF / CODEX / PhenoCycler Fusion
Stereo-seq / Stereo-seq Spatial Transcriptomics
Visium HD
Xenium (18)
Modality
Spatial proteomics
Spatial transcriptomics (18)
Sample
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Cervical_Cancer_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lymph_Node_Reactive_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_FF
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Ovarian_Cancer_FFPE_XRrun
CastlemanDisease_40593805__Xenium__xenium_dat__Core1
CastlemanDisease_40593805__Xenium__xenium_dat__Core10
CastlemanDisease_40593805__Xenium__xenium_dat__Core11
CastlemanDisease_40593805__Xenium__xenium_dat__Core12
CastlemanDisease_40593805__Xenium__xenium_dat__Core13
CastlemanDisease_40593805__Xenium__xenium_dat__Core14
CastlemanDisease_40593805__Xenium__xenium_dat__Core15
CastlemanDisease_40593805__Xenium__xenium_dat__Core16
CastlemanDisease_40593805__Xenium__xenium_dat__Core17
CastlemanDisease_40593805__Xenium__xenium_dat__Core18
CastlemanDisease_40593805__Xenium__xenium_dat__Core2
CastlemanDisease_40593805__Xenium__xenium_dat__Core3
CastlemanDisease_40593805__Xenium__xenium_dat__Core4
CastlemanDisease_40593805__Xenium__xenium_dat__Core5
CastlemanDisease_40593805__Xenium__xenium_dat__Core6
CastlemanDisease_40593805__Xenium__xenium_dat__Core7
CastlemanDisease_40593805__Xenium__xenium_dat__Core8
CastlemanDisease_40593805__Xenium__xenium_dat__Core9
DKD_42056516__Xenium__1001
DKD_42056516__Xenium__1003
DKD_42056516__Xenium__1004
DKD_42056516__Xenium__1005
DKD_42056516__Xenium__1006
DKD_42056516__Xenium__1007
DKD_42056516__Xenium__1008
DKD_42056516__Xenium__1009
DKD_42056516__Xenium__1010
DKD_42056516__Xenium__1011
DKD_42056516__Xenium__1012
DKD_42056516__Xenium__1013
DKD_42056516__Xenium__HK2695
DKD_42056516__Xenium__HK2753
DKD_42056516__Xenium__HK3106
DKD_42056516__Xenium__HK3626
HGSC_39179931__Xenium__XEN_T10_A2
HGSC_39179931__Xenium__XEN_T10_B2
HGSC_39179931__Xenium__XEN_T10_B4
HGSC_39179931__Xenium__XEN_T10_C2
HGSC_39179931__Xenium__XEN_T10_C4
HGSC_39179931__Xenium__XEN_T10_D1
HGSC_39179931__Xenium__XEN_T10_D2
HGSC_39179931__Xenium__XEN_T10_D3
HGSC_39179931__Xenium__XEN_T10_D4
HGSC_39179931__Xenium__XEN_T10_D5
HGSC_39179931__Xenium__XEN_T10_E2
HGSC_39179931__Xenium__XEN_T10_E3
HGSC_39179931__Xenium__XEN_T10_E4
HGSC_39179931__Xenium__XEN_T10_E5
HGSC_39179931__Xenium__XEN_T10_F1
HGSC_39179931__Xenium__XEN_T10_F2
HGSC_39179931__Xenium__XEN_T10_F3
HGSC_39179931__Xenium__XEN_T10_F4
HGSC_39179931__Xenium__XEN_T10_F5
HGSC_39179931__Xenium__XEN_T10_G2
HGSC_39179931__Xenium__XEN_T10_G3
HGSC_39179931__Xenium__XEN_T10_G4
HGSC_39179931__Xenium__XEN_T10_H1
HGSC_39179931__Xenium__XEN_T10_H2
HGSC_39179931__Xenium__XEN_T10_H3
HGSC_39179931__Xenium__XEN_T10_H4
HGSC_39179931__Xenium__XEN_T10_H5
HGSC_39179931__Xenium__XEN_T10_I1
HGSC_39179931__Xenium__XEN_T10_I2
HGSC_39179931__Xenium__XEN_T10_I3
HGSC_39179931__Xenium__XEN_T10_I4
HGSC_39179931__Xenium__XEN_T10_I5
Intestine_39843748__Xenium__GSE280895_human__human_05_r1
Intestine_39843748__Xenium__GSE280895_human__human_05_r2
Intestine_39843748__Xenium__GSE280895_human__human_09_r1
Intestine_39843748__Xenium__GSE280895_human__human_09_r2
Intestine_39843748__Xenium__GSE280895_perturb__SI_2
Intestine_39843748__Xenium__GSE280895_perturb__SI_3
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI_r2
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI_r2
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_Ctrl
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_r2
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI_r2
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI1
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI2
PulmonaryFibrosis_39901013__Xenium__THD0008
PulmonaryFibrosis_39901013__Xenium__THD0011
PulmonaryFibrosis_39901013__Xenium__TILD028MF
PulmonaryFibrosis_39901013__Xenium__TILD049LF
PulmonaryFibrosis_39901013__Xenium__TILD080MF
PulmonaryFibrosis_39901013__Xenium__TILD111LF
PulmonaryFibrosis_39901013__Xenium__TILD113MF
PulmonaryFibrosis_39901013__Xenium__TILD117LF
PulmonaryFibrosis_39901013__Xenium__TILD117MF
PulmonaryFibrosis_39901013__Xenium__TILD117MFB
PulmonaryFibrosis_39901013__Xenium__TILD130MF
PulmonaryFibrosis_39901013__Xenium__TILD167LF
PulmonaryFibrosis_39901013__Xenium__TILD175
PulmonaryFibrosis_39901013__Xenium__TILD299LF
PulmonaryFibrosis_39901013__Xenium__TILD315LF
PulmonaryFibrosis_39901013__Xenium__VUHD038
PulmonaryFibrosis_39901013__Xenium__VUHD049
PulmonaryFibrosis_39901013__Xenium__VUHD069
PulmonaryFibrosis_39901013__Xenium__VUHD090
PulmonaryFibrosis_39901013__Xenium__VUHD095
PulmonaryFibrosis_39901013__Xenium__VUHD113
PulmonaryFibrosis_39901013__Xenium__VUHD116A
PulmonaryFibrosis_39901013__Xenium__VUHD116B
PulmonaryFibrosis_39901013__Xenium__VUILD102LF
PulmonaryFibrosis_39901013__Xenium__VUILD102MF
PulmonaryFibrosis_39901013__Xenium__VUILD104LF
PulmonaryFibrosis_39901013__Xenium__VUILD104MF
PulmonaryFibrosis_39901013__Xenium__VUILD105LF
PulmonaryFibrosis_39901013__Xenium__VUILD105MF
PulmonaryFibrosis_39901013__Xenium__VUILD106
PulmonaryFibrosis_39901013__Xenium__VUILD107MF
PulmonaryFibrosis_39901013__Xenium__VUILD110
PulmonaryFibrosis_39901013__Xenium__VUILD115
PulmonaryFibrosis_39901013__Xenium__VUILD141
PulmonaryFibrosis_39901013__Xenium__VUILD142
PulmonaryFibrosis_39901013__Xenium__VUILD48LF
PulmonaryFibrosis_39901013__Xenium__VUILD48MF
PulmonaryFibrosis_39901013__Xenium__VUILD49
PulmonaryFibrosis_39901013__Xenium__VUILD58
PulmonaryFibrosis_39901013__Xenium__VUILD78LF
PulmonaryFibrosis_39901013__Xenium__VUILD78MF
PulmonaryFibrosis_39901013__Xenium__VUILD91LF
PulmonaryFibrosis_39901013__Xenium__VUILD91MF
PulmonaryFibrosis_39901013__Xenium__VUILD96LF
PulmonaryFibrosis_39901013__Xenium__VUILD96MF
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_COAD
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_HCC
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_OV
SPATCH_41107232__Xenium__SPATCH_Xenium_COAD
SPATCH_41107232__Xenium__SPATCH_Xenium_HCC
SPATCH_41107232__Xenium__SPATCH_Xenium_OV
SpinalCord_38513664__Xenium__CTRL1
SpinalCord_38513664__Xenium__CTRL2
SpinalCord_38513664__Xenium__MSa1
SpinalCord_38513664__Xenium__MSa2
SpinalCord_38513664__Xenium__MSi1
SpinalCord_38513664__Xenium__MSi2
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Alzheimers_With_Addon
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Glioblastoma_With_Addon
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Healthy_With_Addon
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_1
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_2
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_With_Addon
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC_With_Addon
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Brain_GBM_FFPE
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Colorectal_Cancer_Addon_FFPE
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ductal_Adenocarcinoma_FFPE
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_Addon_FFPE
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ovarian_Cancer_Addon_FFPE
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Lung_Cancer_With_Add_on_2_FFPE
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Non_diseased_Lung_With_Add_on_FFPE
XeniumLung_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBone_nondiseased_section
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_acute_lymphoid_leukemia_section
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_nondiseased_section
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hHeart_nondiseased_section_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_cancer_section
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_nondiseased_section
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_cancer_section_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_nondiseased_section_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLung_cancer_section
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLymphNode_nondiseased_section
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_Cancer_Add_on_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_nondiseased_section
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hSkin_nondiseased_section_1_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hSkin_nondiseased_section_2_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hTonsil_follicular_lymphoid_hyperplasia_section_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hTonsil_reactive_follicular_hyperplasia_section_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Kidney_FFPE_Protein_updated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Ovary_Cancer_FF
XeniumMulti_10xGenomics__Xenium__Xenium_V1_human_Pancreas_FFPE
XeniumMulti_10xGenomics__Xenium__Xenium_V1_humanLung_Cancer_FFPE
IgAN_38898271__Xenium__GSM8216268
MIBC_42126225__Xenium__GSM9625559_A1R2
MIBC_42126225__Xenium__GSM9625560_A1R4
MIBC_42126225__Xenium__GSM9625561_A1R5
MIBC_42126225__Xenium__GSM9625562_A1R6
MIBC_42126225__Xenium__GSM9625563_A2R2
Oral_41663813__Xenium__Oral_41663813_H1
Oral_41663813__Xenium__Oral_41663813_H2a
Oral_41663813__Xenium__Oral_41663813_H2b
Oral_41663813__Xenium__Oral_41663813_H3a
Oral_41663813__Xenium__Oral_41663813_H3b
Oral_41663813__Xenium__Oral_41663813_H4
Oral_41663813__Xenium__Oral_41663813_H4a
Oral_41663813__Xenium__Oral_41663813_H4b
Oral_41663813__Xenium__Oral_41663813_H5
Oral_41663813__Xenium__Oral_41663813_H6
Oral_41663813__Xenium__Oral_41663813_H7a
Oral_41663813__Xenium__Oral_41663813_H7b
Oral_41663813__Xenium__Oral_41663813_H8
Oral_41663813__Xenium__Oral_41663813_H9a
Oral_41663813__Xenium__Oral_41663813_H9b
Oral_41663813__Xenium__Oral_41663813_P1
Oral_41663813__Xenium__Oral_41663813_P10
Oral_41663813__Xenium__Oral_41663813_P12a
Oral_41663813__Xenium__Oral_41663813_P12b
Oral_41663813__Xenium__Oral_41663813_P13a
Oral_41663813__Xenium__Oral_41663813_P13b
Oral_41663813__Xenium__Oral_41663813_P13c
Oral_41663813__Xenium__Oral_41663813_P14a
Oral_41663813__Xenium__Oral_41663813_P14b
Oral_41663813__Xenium__Oral_41663813_P15
Oral_41663813__Xenium__Oral_41663813_P2a
Oral_41663813__Xenium__Oral_41663813_P2b
Oral_41663813__Xenium__Oral_41663813_P2c
Oral_41663813__Xenium__Oral_41663813_P2d
Oral_41663813__Xenium__Oral_41663813_P3
Oral_41663813__Xenium__Oral_41663813_P4a
Oral_41663813__Xenium__Oral_41663813_P4b
Oral_41663813__Xenium__Oral_41663813_P5a
Oral_41663813__Xenium__Oral_41663813_P5b
Oral_41663813__Xenium__Oral_41663813_P5c
Oral_41663813__Xenium__Oral_41663813_P6
Oral_41663813__Xenium__Oral_41663813_P7a
Oral_41663813__Xenium__Oral_41663813_P7b
Oral_41663813__Xenium__Oral_41663813_P8
Oral_41663813__Xenium__Oral_41663813_P9a
Oral_41663813__Xenium__Oral_41663813_P9b
Oral_41663813__Xenium__Oral_41663813_P9c
Oral_41663813__Xenium__Oral_41663813_P9d
Oral_41663813__Xenium__Oral_41663813_P9e
PDAC_41916312__Xenium__AF-2693_SNV_PDAC_PANCREAS__Region_3
Curation
All
Curated
DEG
All
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Available
Caveat
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Held
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Search: Xenium
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250 matches
199 curated
Download sample CSV
Showing 51-100 of 250
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Sample
Organ
Disease state
Technique
Cells
Spatial module
Curation
HGSC_39179931__Xenium__XEN_T10_D1
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
24,497
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_D2
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
11,634
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_D3
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
12,934
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_D4
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
9,706
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_D5
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
23,893
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_E2
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
7,506
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_E3
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
8,462
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_E4
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
14,477
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_E5
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
25,883
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_F1
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
16,234
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_F2
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
21,101
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_F3
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
8,750
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_F4
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
10,193
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_F5
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
5,977
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_G2
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
12,439
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_G3
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
19,065
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_G4
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
9,451
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_H1
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
12,330
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_H2
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
13,335
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_H3
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
2,369
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_H4
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
9,052
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_H5
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
11,063
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_I1
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
23,472
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_I2
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
18,004
D
I
T
Curated
HGSC_39179931__Xenium__XEN_T10_I3
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
3,961
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_I4
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
5,032
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
HGSC_39179931__Xenium__XEN_T10_I5
HGSC_39179931 · Xenium
Ovary
Primary cancer
Xenium
10,219
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
Intestine_39843748__Xenium__GSE280895_human__human_05_r1
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
59,128
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_human__human_05_r2
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
61,896
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_human__human_09_r1
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
44,654
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_human__human_09_r2
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
48,868
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_perturb__SI_2
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
239,393
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_perturb__SI_3
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
157,481
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
251,218
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI_r2
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
258,269
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
322,464
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI_r2
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
274,464
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_Ctrl
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
272,699
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_r2
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
198,887
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
255,440
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI_r2
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
241,781
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI1
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
242,156
D
I
T
Curated
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI2
Intestine_39843748 · Xenium
Small intestine
Healthy/control
Xenium
191,024
D
I
T
Curated
PulmonaryFibrosis_39901013__Xenium__THD0008
PulmonaryFibrosis_39901013 · Xenium
Lung
Healthy/control
Xenium
36,781
D
I
T
Curated
PulmonaryFibrosis_39901013__Xenium__THD0011
PulmonaryFibrosis_39901013 · Xenium
Lung
Healthy/control
Xenium
23,676
D
I
T
Curated
PulmonaryFibrosis_39901013__Xenium__TILD028MF
PulmonaryFibrosis_39901013 · Xenium
Lung
Non-cancer disease
Xenium
10,153
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PulmonaryFibrosis_39901013__Xenium__TILD049LF
PulmonaryFibrosis_39901013 · Xenium
Lung
Non-cancer disease
Xenium
1,210
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PulmonaryFibrosis_39901013__Xenium__TILD080MF
PulmonaryFibrosis_39901013 · Xenium
Lung
Non-cancer disease
Xenium
8,194
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PulmonaryFibrosis_39901013__Xenium__TILD111LF
PulmonaryFibrosis_39901013 · Xenium
Lung
Non-cancer disease
Xenium
11,379
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PulmonaryFibrosis_39901013__Xenium__TILD113MF
PulmonaryFibrosis_39901013 · Xenium
Lung
Non-cancer disease
Xenium
6,867
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
Showing 51-100 of 250
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