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scAtria
single-cell spatial atlas resource
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Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset
Sample
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Table
7,709 Samples
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Study ID
HNSCC_41616773
Modality
Spatial transcriptomics
Technique
Xenium
Organ
breast
Disease state
primary cancer
Disease detail
breast cancer
Filter scope
7,709 matches · sample view
Applied
Dataset
ASD_42288509 · MERFISH / MERSCOPE
10x Genomics Atera showcase
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion
BrainTumor_36725935 · IMC / Imaging Mass Cytometry
BRCA_31959985 · IMC / Imaging Mass Cytometry
BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging
BRCA_35122013 · IMC / Imaging Mass Cytometry
CastlemanDisease_40593805 · Xenium
CervicalCancer_CmTSA_41807362
cHL_41923627 · CosMx SMI / NanoString SMI
cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging
cHL_41923627 · PCF / CODEX / PhenoCycler Fusion
CML_41592325 · PCF / CODEX / PhenoCycler Fusion
Bruker CosMx 1k FFPE showcase
Bruker CosMx 64-protein FFPE showcase
Bruker CosMx 6k FFPE showcase
Bruker CosMx WTx FFPE showcase
CRC_32763154 · PCF / CODEX / PhenoCycler Fusion
CRC_40189697 · IMC / Imaging Mass Cytometry
CRC_41986711 · CosMx SMI / NanoString SMI
CRC_42167227 · CosMx SMI / NanoString SMI
CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI
DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion
DKD_42056516 · CosMx SMI / NanoString SMI
DKD_42056516 · Xenium
DLBCL_41120574 · CosMx SMI / NanoString SMI
DLBCL_41874448 · CosMx SMI / NanoString SMI
DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion
GBM_40972572 · CosMx SMI Protein
HCC_39304772 · PCF / CODEX / PhenoCycler Fusion
HCC_39327501 · PCF / CODEX / PhenoCycler Fusion
HCC_39455893 · IMC / Imaging Mass Cytometry
HCC_39965889 · PCF / CODEX / PhenoCycler Fusion
LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI
HGSC_39179931 · CosMx SMI / NanoString SMI
HGSC_39179931 · MERFISH / MERSCOPE
HGSC_39179931 · Xenium
HGSOC_38570491 · CosMx SMI / NanoString SMI
HNSCC_41616773 · Other ST
HNSCC_41616773 PCF discovery cohort
HNSCC_41616773 PCF healthy lymph node cohort
HNSCC_41616773 PCF validation cohort
IBD_42049732 · CosMx SMI / NanoString SMI
LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI
IgAN_38898271 · Xenium
Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion
Intestine_39843748 · MERFISH / MERSCOPE
Intestine_39843748 · Xenium
Liver_41986723 · MERFISH / MERSCOPE
LUAD_36725934 · IMC / Imaging Mass Cytometry
Melanoma_35363543 · IMC / Imaging Mass Cytometry
Melanoma_40148341 · CosMx SMI / NanoString SMI
Melanoma_40457060 · CosMx SMI / NanoString SMI
Melanoma_41916292 · CyCIF / Cyclic IF
MERFISH 500-plex Vizgen showcase
MERFISH 815-plex Vizgen showcase
MERFISH 960-plex Vizgen showcase
MIBC_42126225 · Xenium
Neocortex_39779846 · MERFISH / MERSCOPE
Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion
NormalSkin_41872488 · MERFISH / MERSCOPE
NSCLC_38242124 · IMC / Imaging Mass Cytometry
NSCLC_40220761 · CosMx SMI / NanoString SMI
NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion
Oral_41663813 · Xenium
OSCC_41707652 · IMC / Imaging Mass Cytometry
PDAC_39227743 · CosMx SMI / NanoString SMI
PDAC_40269162 · CosMx SMI / NanoString SMI
PDAC_41916312 · Xenium
PulmonaryFibrosis_39901013 · Xenium
RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI
SCN_41720090 · MERFISH / MERSCOPE
SCN_41720090 · Visium HD
SPATCH_41107232 · CosMx SMI / NanoString SMI
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics
SPATCH_41107232 · Xenium
SpinalCord_38513664 · ISS / In Situ Sequencing
SpinalCord_38513664 · Xenium
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
UlcerativeColitis_38374043 CosMx 960-plex Run 1
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
10x Genomics Visium HD showcase
10x Genomics Visium HD p2 TissueArray showcase
10x Genomics Visium HD p2 TMA showcase
10x Genomics Visium HD p2 WholeSlide showcase
10x Genomics Xenium Prime 5K showcase
Xenium Human Brain Gene Expression Panel showcase
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Xenium Human Immuno-Oncology Profiling Panel showcase
Xenium Human Lung Gene Expression Panel showcase
Xenium Human Multi-Tissue and Cancer Panel showcase
Organ
Brain (489)
Spinal cord (58)
Head and neck (336)
Lymphoid tissue (450)
Musculoskeletal (61)
Skin (224)
Breast (1,099)
Lung (2,814)
Liver (515)
Adrenal gland (24)
Kidney (70)
Bladder (5)
Pancreas (116)
Small intestine (57)
Large intestine (851)
Ovary (223)
Prostate (4)
Uterus/Cervix (7)
Bone marrow (90)
Heart (2)
Disease state
Healthy/control (594)
Primary cancer (6,347)
Metastatic cancer (346)
Non-cancer disease (422)
Disease detail
Acute lymphoid leukemia (1)
Acute myeloid leukemia (5)
Adenosquamous lung carcinoma (60)
Alzheimer's disease (1)
Astrocytoma (Primary) (20)
Astrocytoma (Progression from grade II/III) (2)
Astrocytoma (Recurrent) (6)
Autism spectrum disorder cortical organoid model (71)
B-cell non-Hodgkin lymphoma (35)
Brain metastasis
Brain metastasis from Bladder/urinary tract
Brain metastasis from Breast (29)
Brain metastasis from extremity (1)
Brain metastasis from Intestine
Brain metastasis from Lung (53)
Brain metastasis from Ovary/Fallopian tube
Brain metastasis from Skin (19)
Brain metastasis from Stomach/upper GI (3)
Brain metastasis from trunk (1)
Breast cancer (883)
Breast cancer (CCH/DCIS, ER+/PR+/HER2-1+) (1)
Breast cancer (DCIS, ER+/PR+/HER2-2+) (2)
Breast cancer (DCIS, ER-/PR-/HER2-2+) (1)
Breast cancer (DCIS, HER2-1+) (2)
Breast cancer (DCIS, HER2-2+) (1)
Breast cancer (DCIS, HER2-3+) (1)
Breast cancer (ductal carcinoma in situ) (59)
Breast cancer (ductal carcinoma in situ, HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-2+) (1)
Breast cancer (IDC, HER2-) (1)
Breast cancer (invasive ductal carcinoma) (12)
Breast cancer (invasive ductal carcinoma, ductal carcinoma in situ) (2)
Breast cancer (invasive lobular carcinoma) (6)
Castleman disease (18)
Cervical Cancer (1)
Cervical cancer (2)
Cervical cancer (squamous cell carcinoma) (1)
Chronic myeloid leukemia bone marrow (55)
Classical Hodgkin lymphoma (79)
Colorectal cancer (682)
Colorectal cancer (adenocarcinoma) (13)
Cutaneous leishmaniasis (4)
Developing healthy lung (5)
Diffuse large B-cell lymphoma (92)
Experimental autoimmune encephalomyelitis (multiple sclerosis model) (52)
Follicular lymphoid hyperplasia (1)
Glioblastoma (6)
Glioblastoma (Primary) (209)
Glioblastoma (Progression from grade II/III) (3)
Glioblastoma (Recurrent) (16)
Glioblastoma (Residual) (2)
Glioma, IDH status unknown (Primary) (12)
Head and neck squamous cell carcinoma (277)
Healthy/control kidney (15)
Healthy/control lung (10)
Healthy/normal skin (114)
Healthy adult human intestine (66)
Healthy colon control (31)
Healthy human (14)
Healthy intestine (18)
Hepatocellular carcinoma (500)
High-grade serous carcinoma (204)
IgA nephropathy (1)
Inflammatory bowel disease (34)
Intrahepatic cholangiocarcinoma (6)
Kidney cancer (1)
Kidney cancer (papillary renal cell carcinoma) (1)
Kidney cancer (renal cell carcinoma) (1)
Kidney disease (AA amyloid) (2)
Kidney disease (C3GN) (1)
Kidney disease (CKD) (1)
Kidney disease (DKD) (29)
Kidney disease (DKD+FSGS) (1)
Kidney disease (DM) (6)
Kidney disease (DM/HTN) (4)
Kidney disease (FSGS) (1)
Kidney disease (HTN) (1)
Kidney disease (IgA) (1)
Kidney disease (MN) (1)
Kidney disease (TMA) (1)
Large-cell/other non-small cell lung cancer (15)
Lung adenocarcinoma (1,413)
Lung cancer (4)
Lung cancer (invasive acinar adenocarcinoma) (6)
Lung cancer (invasive adenocarcinoma) (1)
Lung squamous cell carcinoma (137)
Lymphoid tissue metastasis
Lymphoid tissue metastasis from acral (1)
Lymphoid tissue metastasis from extremity (3)
Lymphoid tissue metastasis from head/neck (1)
Lymphoid tissue metastasis from Oral cavity
Lymphoid tissue metastasis from trunk (2)
Melanocytic nevus / non-malignant skin control (12)
Melanoma (92)
Multiple sclerosis (4)
Muscle-invasive bladder cancer (5)
Neuroblastoma (24)
Non-small cell lung cancer (1,114)
Normal/healthy bone marrow control (27)
Normal/healthy breast tissue control (97)
Normal/healthy heart control (1)
Normal/healthy hippocampus brain tissue (1)
Normal/healthy kidney control (1)
Normal/healthy liver control (6)
Normal/healthy pancreas control (3)
Normal/healthy suprachiasmatic nucleus brain tissue (2)
Normal/healthy tonsil control (1)
Normal brain cortex (1)
Normal developing human neocortex (6)
Oral health (15)
Oral squamous cell carcinoma (92)
Organ-specific lymph-node control/no cancer (142)
Organ-specific spinal-cord control/no cancer (2)
Other non-small cell lung cancer (13)
Ovarian cancer (10)
Ovarian cancer (adenocarcinoma) (1)
Ovarian cancer (clear cell adenocarcinoma) (1)
Ovarian cancer (papillary serous carcinoma) (7)
Pancreatic cancer (1)
Pancreatic ductal adenocarcinoma (110)
Periodontitis (29)
Prostate cancer (2)
Prostate cancer (adenocarcinoma) (2)
Pulmonary fibrosis / interstitial lung disease (cHP) (4)
Pulmonary fibrosis / interstitial lung disease (CPFE) (1)
Pulmonary fibrosis / interstitial lung disease (CTD-ILD) (2)
Pulmonary fibrosis / interstitial lung disease (ILD) (6)
Pulmonary fibrosis / interstitial lung disease (IPAF) (2)
Pulmonary fibrosis / interstitial lung disease (IPF) (16)
Pulmonary fibrosis / interstitial lung disease (NSIP) (2)
Pulmonary fibrosis / interstitial lung disease (Sarcoidosis) (2)
Reactive Follicular Hyperplasia (1)
Reactive follicular hyperplasia (1)
Reactive lymph node (1)
Rheumatoid arthritis (active) (36)
Rheumatoid arthritis (remission) (24)
Skin cancer (1)
Skin metastasis
Skin metastasis from extremity (1)
Skin metastasis from head/neck (2)
Skin metastasis from trunk (1)
Triple-negative breast cancer (27)
Ulcerative colitis (4)
Ulcerative colitis (post-vedolizumab, non-responder) (8)
Ulcerative colitis (post-vedolizumab, responder) (10)
Ulcerative colitis (pre-vedolizumab, non-responder) (7)
Ulcerative colitis (pre-vedolizumab, responder) (25)
Ulcerative colitis (vedolizumab-treated) (5)
Uterine cancer (3)
Technique
Atera (1)
CmTSA (1)
CosMx SMI / NanoString SMI (24)
CosMx SMI Protein (2)
CyCIF / Cyclic IF (1)
IMC / Imaging Mass Cytometry (9)
ISS / In Situ Sequencing (1)
MERFISH / MERSCOPE (10)
MIBI-TOF / Multiplexed Ion Beam Imaging (2)
Other ST (1)
PCF / CODEX / PhenoCycler Fusion (18)
Stereo-seq / Stereo-seq Spatial Transcriptomics (1)
Visium HD (5)
Xenium (18)
Modality
Spatial proteomics (33)
Spatial transcriptomics (61)
Sample
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Breast_Cancer (1)
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Cervical_Cancer (1)
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Breast_Cancer (1)
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Colon_Cancer (1)
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Lung_Cancer (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C06 (1)
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_11mm_Human_Colon_Cancer_Fresh_Frozen (1)
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Colon_Cancer (1)
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Heart (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Cervical_Cancer_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lymph_Node_Reactive_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_FF (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Ovarian_Cancer_FFPE_XRrun (1)
B-NHL_38379051__PCF_CODEX__191_1reg001 (1)
B-NHL_38379051__PCF_CODEX__191_1reg002 (1)
B-NHL_38379051__PCF_CODEX__191_1reg003 (1)
B-NHL_38379051__PCF_CODEX__191_1reg004 (1)
B-NHL_38379051__PCF_CODEX__191_1reg005 (1)
B-NHL_38379051__PCF_CODEX__191_1reg006 (1)
B-NHL_38379051__PCF_CODEX__191_2reg001 (1)
B-NHL_38379051__PCF_CODEX__191_2reg002 (1)
B-NHL_38379051__PCF_CODEX__191_2reg003 (1)
B-NHL_38379051__PCF_CODEX__191_2reg004 (1)
B-NHL_38379051__PCF_CODEX__191_2reg005 (1)
B-NHL_38379051__PCF_CODEX__191_2reg006 (1)
B-NHL_38379051__PCF_CODEX__191_2reg007 (1)
B-NHL_38379051__PCF_CODEX__191_2reg008 (1)
B-NHL_38379051__PCF_CODEX__191_3reg001 (1)
B-NHL_38379051__PCF_CODEX__191_3reg002 (1)
B-NHL_38379051__PCF_CODEX__191_3reg003 (1)
B-NHL_38379051__PCF_CODEX__191_3reg004 (1)
B-NHL_38379051__PCF_CODEX__191_3reg005 (1)
B-NHL_38379051__PCF_CODEX__191_3reg006 (1)
B-NHL_38379051__PCF_CODEX__191_3reg007 (1)
B-NHL_38379051__PCF_CODEX__191_3reg008 (1)
B-NHL_38379051__PCF_CODEX__191_4reg001 (1)
B-NHL_38379051__PCF_CODEX__191_4reg002 (1)
B-NHL_38379051__PCF_CODEX__191_4reg003 (1)
B-NHL_38379051__PCF_CODEX__191_4reg004 (1)
B-NHL_38379051__PCF_CODEX__191_4reg005 (1)
B-NHL_38379051__PCF_CODEX__191_4reg006 (1)
B-NHL_38379051__PCF_CODEX__191_4reg007 (1)
B-NHL_38379051__PCF_CODEX__191_5reg001 (1)
B-NHL_38379051__PCF_CODEX__191_5reg002 (1)
B-NHL_38379051__PCF_CODEX__191_5reg003 (1)
B-NHL_38379051__PCF_CODEX__191_5reg004 (1)
B-NHL_38379051__PCF_CODEX__191_5reg005 (1)
B-NHL_38379051__PCF_CODEX__191_5reg006 (1)
BoneMarrow_38714197__PCF_CODEX__H10 (1)
BoneMarrow_38714197__PCF_CODEX__H14 (1)
BoneMarrow_38714197__PCF_CODEX__H26 (1)
BoneMarrow_38714197__PCF_CODEX__H27 (1)
BoneMarrow_38714197__PCF_CODEX__H32 (1)
BoneMarrow_38714197__PCF_CODEX__H33 (1)
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BRCA_31959985__IMC__BaselTMA_SP42_210_X4Y5__gate233 (1)
BRCA_31959985__IMC__BaselTMA_SP42_215_X3Y1__gate243 (1)
BRCA_31959985__IMC__BaselTMA_SP42_215_X4Y1__gate247 (1)
BRCA_31959985__IMC__BaselTMA_SP42_217_X1Y3__gate249 (1)
BRCA_31959985__IMC__BaselTMA_SP42_217_X2Y3__gate239 (1)
BRCA_31959985__IMC__BaselTMA_SP42_223_X9Y7__gate157 (1)
BRCA_31959985__IMC__BaselTMA_SP42_229_X1Y7__gate234 (1)
BRCA_31959985__IMC__BaselTMA_SP42_232_X7Y6__gate198 (1)
BRCA_31959985__IMC__BaselTMA_SP42_236_X11Y7__gate165 (1)
BRCA_31959985__IMC__BaselTMA_SP42_240_X10Y2__gate181 (1)
BRCA_31959985__IMC__BaselTMA_SP42_240_X9Y2__gate176 (1)
BRCA_31959985__IMC__BaselTMA_SP42_251_X15Y2__gate149 (1)
BRCA_31959985__IMC__BaselTMA_SP42_251_X16Y2__gate152 (1)
BRCA_31959985__IMC__BaselTMA_SP42_253_X13Y2__gate145 (1)
BRCA_31959985__IMC__BaselTMA_SP42_253_X14Y2__gate147 (1)
BRCA_31959985__IMC__BaselTMA_SP42_25_X3Y2__gate242 (1)
BRCA_31959985__IMC__BaselTMA_SP42_25_X4Y2__gate246 (1)
BRCA_31959985__IMC__BaselTMA_SP42_261_X11Y6__gate166 (1)
BRCA_31959985__IMC__BaselTMA_SP42_262_X10Y8__gate160 (1)
BRCA_31959985__IMC__BaselTMA_SP42_264_X14Y5__gate136 (1)
BRCA_31959985__IMC__BaselTMA_SP42_265_X14Y1__gate153 (1)
BRCA_31959985__IMC__BaselTMA_SP42_273_X4Y7__gate231 (1)
BRCA_31959985__IMC__BaselTMA_SP42_273_X6Y7__gate193 (1)
BRCA_31959985__IMC__BaselTMA_SP42_275_X5Y4__gate204 (1)
BRCA_31959985__IMC__BaselTMA_SP42_275_X6Y4__gate208 (1)
BRCA_31959985__IMC__BaselTMA_SP42_279_X14Y6__gate135 (1)
BRCA_31959985__IMC__BaselTMA_SP42_27_X6Y6__gate194 (1)
BRCA_31959985__IMC__BaselTMA_SP42_285_X7Y7__gate197 (1)
BRCA_31959985__IMC__BaselTMA_SP42_28_X11Y2__gate185 (1)
BRCA_31959985__IMC__BaselTMA_SP42_28_X12Y2__gate173 (1)
BRCA_31959985__IMC__BaselTMA_SP42_29_X7Y2__gate213 (1)
BRCA_31959985__IMC__BaselTMA_SP42_30_X8Y3__gate216 (1)
BRCA_31959985__IMC__BaselTMA_SP42_30_X9Y3__gate175 (1)
BRCA_31959985__IMC__BaselTMA_SP42_35_X16Y4__gate150 (1)
BRCA_31959985__IMC__BaselTMA_SP42_36_X5Y1__gate207 (1)
BRCA_31959985__IMC__BaselTMA_SP42_36_X6Y1__gate211 (1)
BRCA_31959985__IMC__BaselTMA_SP42_46_X10Y7__gate161 (1)
BRCA_31959985__IMC__BaselTMA_SP42_51_X1Y2__gate250 (1)
BRCA_31959985__IMC__BaselTMA_SP42_56_X2Y6__gate221 (1)
BRCA_31959985__IMC__BaselTMA_SP42_59_X3Y9__gate223 (1)
BRCA_31959985__IMC__BaselTMA_SP42_5_X8Y7__gate201 (1)
BRCA_31959985__IMC__BaselTMA_SP42_64_X13Y4__gate143 (1)
BRCA_31959985__IMC__BaselTMA_SP42_64_X14Y4__gate146 (1)
BRCA_31959985__IMC__BaselTMA_SP42_6_X11Y1__gate186 (1)
BRCA_31959985__IMC__BaselTMA_SP42_6_X12Y1__gate174 (1)
BRCA_31959985__IMC__BaselTMA_SP42_70_X5Y3__gate205 (1)
BRCA_31959985__IMC__BaselTMA_SP42_70_X6Y3__gate209 (1)
BRCA_31959985__IMC__BaselTMA_SP42_71_X8Y8__gate200 (1)
BRCA_31959985__IMC__BaselTMA_SP42_73_X12Y7__gate169 (1)
BRCA_31959985__IMC__BaselTMA_SP42_74_X15Y3__gate148 (1)
BRCA_31959985__IMC__BaselTMA_SP42_74_X16Y3__gate151 (1)
BRCA_31959985__IMC__BaselTMA_SP42_76_X13Y6__gate131 (1)
BRCA_31959985__IMC__BaselTMA_SP42_80_X3Y3__gate241 (1)
BRCA_31959985__IMC__BaselTMA_SP42_80_X4Y3__gate245 (1)
BRCA_31959985__IMC__BaselTMA_SP42_81_X11Y4__gate183 (1)
BRCA_31959985__IMC__BaselTMA_SP42_81_X12Y4__gate187 (1)
BRCA_31959985__IMC__BaselTMA_SP42_82_X2Y9__gate218 (1)
BRCA_31959985__IMC__BaselTMA_SP42_84_X7Y1__gate214 (1)
BRCA_31959985__IMC__BaselTMA_SP42_84_X8Y1__gate217 (1)
BRCA_31959985__IMC__BaselTMA_SP42_87_X12Y5__gate171 (1)
BRCA_31959985__IMC__BaselTMA_SP42_89_X4Y6__gate232 (1)
BRCA_31959985__IMC__BaselTMA_SP42_91_X11Y3__gate184 (1)
BRCA_31959985__IMC__BaselTMA_SP42_91_X12Y3__gate172 (1)
BRCA_31959985__IMC__BaselTMA_SP42_96_X10Y3__gate180 (1)
BRCA_31959985__IMC__BaselTMA_SP42_98_X11Y5__gate167 (1)
BRCA_31959985__IMC__BaselTMA_SP42_99_X5Y7__gate189 (1)
BRCA_31959985__IMC__BaselTMA_SP43_0_X10Y7__gate275 (1)
BRCA_31959985__IMC__BaselTMA_SP43_0_X1Y1__gate370 (1)
BRCA_31959985__IMC__BaselTMA_SP43_0_X2Y1__gate371 (1)
BRCA_31959985__IMC__BaselTMA_SP43_102_X1Y4__gate362 (1)
BRCA_31959985__IMC__BaselTMA_SP43_102_X2Y4__gate363 (1)
BRCA_31959985__IMC__BaselTMA_SP43_103_X5Y4__gate321 (1)
BRCA_31959985__IMC__BaselTMA_SP43_103_X6Y4__gate322 (1)
BRCA_31959985__IMC__BaselTMA_SP43_107_X4Y7__gate350 (1)
BRCA_31959985__IMC__BaselTMA_SP43_108_X13Y8__gate376 (1)
BRCA_31959985__IMC__BaselTMA_SP43_110_X14Y8__gate377 (1)
BRCA_31959985__IMC__BaselTMA_SP43_111_X8Y6__gate285 (1)
BRCA_31959985__IMC__BaselTMA_SP43_115_X4Y8__gate334 (1)
Curation
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DEG
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7,709 matches
7,487 curated
Download sample CSV
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Sample
Organ
Disease state
Technique
Cells
Spatial module
Curation
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen
10x Genomics Visium HD showcase
Breast
Primary cancer
Visium HD
159,301
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer
10x Genomics Visium HD showcase
Large intestine
Primary cancer
Visium HD
220,703
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1
10x Genomics Visium HD showcase
Large intestine
Primary cancer
Visium HD
217,921
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5
10x Genomics Visium HD showcase
Large intestine
Primary cancer
Visium HD
151,153
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3
10x Genomics Visium HD showcase
Large intestine
Primary cancer
Visium HD
75,410
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5
10x Genomics Visium HD showcase
Large intestine
Primary cancer
Visium HD
138,127
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE
10x Genomics Visium HD showcase
Kidney
Healthy/control
Visium HD
148,056
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen
10x Genomics Visium HD showcase
Lung
Primary cancer
Visium HD
285,367
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1
10x Genomics Visium HD showcase
Lung
Primary cancer
Visium HD
149,347
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2
10x Genomics Visium HD showcase
Lung
Primary cancer
Visium HD
165,128
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2
10x Genomics Visium HD showcase
Lung
Primary cancer
Visium HD
155,513
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1
10x Genomics Visium HD showcase
Lung
Primary cancer
Visium HD
159,463
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE
10x Genomics Visium HD showcase
Lymphoid tissue
Healthy/control
Visium HD
300,211
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF
10x Genomics Visium HD showcase
Ovary
Primary cancer
Visium HD
183,450
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth
10x Genomics Visium HD showcase
Ovary
Primary cancer
Visium HD
183,449
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas
10x Genomics Visium HD showcase
Pancreas
Healthy/control
Visium HD
50,897
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE
10x Genomics Visium HD showcase
Prostate
Primary cancer
Visium HD
227,257
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen
10x Genomics Visium HD showcase
Lymphoid tissue
Healthy/control
Visium HD
959,759
D
I
T
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE
10x Genomics Xenium Prime 5K showcase
Breast
Primary cancer
Xenium
699,110
D
I
T
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Cervical_Cancer_FFPE
10x Genomics Xenium Prime 5K showcase
Uterus/Cervix
Primary cancer
Xenium
840,387
D
I
T
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE
10x Genomics Xenium Prime 5K showcase
Lung
Primary cancer
Xenium
278,328
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lymph_Node_Reactive_FFPE
10x Genomics Xenium Prime 5K showcase
Lymphoid tissue
Non-cancer disease
Xenium
708,983
D
I
T
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF
10x Genomics Xenium Prime 5K showcase
Ovary
Primary cancer
Xenium
200,900
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_FF
10x Genomics Xenium Prime 5K showcase
Ovary
Primary cancer
Xenium
1,157,659
D
I
T
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE
10x Genomics Xenium Prime 5K showcase
Prostate
Primary cancer
Xenium
193,000
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE
10x Genomics Xenium Prime 5K showcase
Skin
Primary cancer
Xenium
112,551
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Ovarian_Cancer_FFPE_XRrun
10x Genomics Xenium Prime 5K showcase
Ovary
Primary cancer
Xenium
407,124
D
I
T
Curated
B-NHL_38379051__PCF_CODEX__191_1reg001
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
148,293
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_1reg002
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
172,066
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_1reg003
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
152,635
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_1reg004
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
46,106
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_1reg005
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
98,101
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_1reg006
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
127,265
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_2reg001
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
206,365
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_2reg002
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
176,664
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_2reg003
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
174,640
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_2reg004
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
200,175
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_2reg005
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
212,240
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_2reg006
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
227,081
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_2reg007
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
181,135
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_2reg008
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
225,604
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_3reg001
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
100,713
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_3reg002
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
128,605
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_3reg003
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
181,205
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_3reg004
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
84,060
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_3reg005
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
174,321
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_3reg006
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
162,943
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_3reg007
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
129,092
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_3reg008
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
132,526
D
T2
T3
I
T3
T
T1
T2
T3
Curated
B-NHL_38379051__PCF_CODEX__191_4reg001
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
Lymphoid tissue
Primary cancer
CODEX
226,788
D
T2
T3
I
T3
T
T1
T2
T3
Curated
Showing 51-100 of 7,709
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