scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 1,008 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: BRCA_35063072 × 1,008 matches 1,008 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35122013__IMC__MB-0624__core1__image197 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 331 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0625__core1__image189 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,610 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0626__core1__image169 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,339 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0628__core1__image90 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,730 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0629__core1__image137 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 747 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0630__core1__image99 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 133 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0631__core1__image60 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 775 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0633__core1__image76 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,542 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0634__core1__image58 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 49 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0634__core1__image61 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 45 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0635__core1__image16 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 836 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0636__core1__image96 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 524 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0637__core1__image56 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,120 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0638__core1__image554 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 422 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0641__core1__image130 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 785 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0642__core1__image93 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,255 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0643__core1__image53 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,147 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0644__core1__image550 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,312 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0645__core1__image490 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 182 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0646__core1__image506 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,577 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0647__core1__image439 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 170 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0648__core1__image369 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,639 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0650__core1__image418 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,065 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0652__core1__image288 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 770 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0653__core1__image63 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 952 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0654__core1__image82 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 94 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0657__core1__image499 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 798 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0658__core1__image432 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 486 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0659__core1__image361 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 654 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0660__core1__image263 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,063 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0661__core1__image13 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,553 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0662__core1__image101 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,238 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0663__core1__image394 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 567 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0664__core1__image426 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,387 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0666__core1__image355 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,072 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0668__core1__image118 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 638 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0869__core1__image366 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,838 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0872__core1__image262 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 474 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0874__core1__image35 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 724 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0877__core1__image269 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,173 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0880__core1__image526 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0882__core1__image228 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,328 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0884__core1__image382 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,014 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0890__core1__image427 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 589 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0890__core2__image449 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 86 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0891__core1__image278 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 540 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0893__core1__image340 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,315 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0895__core1__image194 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 385 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0897__core1__image400 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 927 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0899__core1__image536 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,096 T1T2T3T1T2T3T1T2T3 Curated