scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
SearchFiltered ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 6,745 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: CervicalCancer_CmTSA_41807362 × 6,745 matches 6,675 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
B-NHL_38379051__PCF_CODEX__191_5reg001 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 214,017 Curated
B-NHL_38379051__PCF_CODEX__191_5reg002 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 203,531 Curated
B-NHL_38379051__PCF_CODEX__191_5reg003 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 227,240 Curated
B-NHL_38379051__PCF_CODEX__191_5reg004 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 179,598 Curated
B-NHL_38379051__PCF_CODEX__191_5reg005 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 165,172 Curated
B-NHL_38379051__PCF_CODEX__191_5reg006 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 174,302 Curated
BoneMarrow_38714197__PCF_CODEX__SB67_NBM44_AML2_191_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 56,978 T1T2T3T1T2T3T1T2T3 Curated
BoneMarrow_38714197__PCF_CODEX__SB67_NBM46_AML1_382_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 61,506 T1T2T3T1T2T3T1T2T3 Curated
BoneMarrow_38714197__PCF_CODEX__SB67_NBM51_AML1_183_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 8,821 T1T2T3T1T2T3T1T2T3 Curated
BoneMarrow_38714197__PCF_CODEX__SB67_NBM52_AML3_1329_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 32,190 T1T2T3T1T2T3T1T2T3 Curated
BoneMarrow_38714197__PCF_CODEX__SB67_NBM54_AML3_1443_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 15,870 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_001C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,253 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_001C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,709 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_001M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 3,720 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_002C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,766 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_002M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,800 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_003C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 4,033 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_003C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,327 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_003M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 453 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_004C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,314 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_004C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 3,232 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_004M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,502 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_005C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 1,662 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_005M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 1,843 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_006C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,393 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_006C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,333 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_006M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 3,372 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_007C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 1,811 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_007M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 3,796 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_008C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 4,121 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_008C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 4,001 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_008M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 5,042 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_009C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 3,669 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_009C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 3,199 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_009M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 4,890 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_010C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,312 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_010C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 3,032 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_010M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,070 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_011M1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 1,819 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_011M2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,411 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_012C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,927 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_012MA BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,055 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_012MB BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,144 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_013C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 1,650 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_013C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,272 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_013C2A BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 0 Curated
BrainTumor_36725935__IMC__BrM_013C2B BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 0 Curated
BrainTumor_36725935__IMC__BrM_013M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 3,872 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_014M1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 2,143 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__BrM_014M2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 660 T1T2T3T1T2T3T1T2T3 Curated