scAtria single-cell spatial atlas resource

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1,128 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Sample Organ Disease state Technique Cells Spatial module Curation
BRCA_31959985__IMC__BaselTMA_SP41_186_X6Y4__gate100 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,965 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_187_X3Y2__gate091 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 194 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_187_X4Y2__gate095 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 62 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_18_X13Y5__gate004 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,851 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_191_X15Y7__gate036 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,544 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_196_X5Y7__gate119 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,392 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_203_X8Y8__gate049 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,771 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_206_X1Y2__gate105 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,389 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_206_X2Y2__gate088 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,853 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_20_X12Y5__gate028 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 399 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_211_X4Y6__gate117 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,284 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_212_X1Y9__gate125 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,203 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_214_X15Y6__gate037 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,123 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_216_X1Y6__gate122 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,422 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X10Y4__gate077 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,554 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X10Y4__gate104 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,468 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate073 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate103 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,580 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_219_X8Y7__gate050 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,755 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_220_X10Y5__gate076 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,569 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_224_X3Y7__gate113 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,593 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_227_X9Y6__gate054 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,631 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_228_X7Y3__gate065 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 263 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate045 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 842 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate061 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,602 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_234_X10Y6__gate057 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,319 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_237_X16Y6__gate039 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,765 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_238_X7Y1__gate067 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,106 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_238_X8Y1__gate071 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,047 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate025 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,734 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate084 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_239_X12Y3__gate001 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 73 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_247_X13Y6__gate032 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,687 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_249_X3Y9__gate124 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,164 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_24_X5Y2__gate098 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,143 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_24_X6Y2__gate062 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,162 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_254_X11Y6__gate060 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,909 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_255_X12Y8__gate040 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,840 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_256_X9Y7__gate053 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,112 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_257_X3Y1__gate092 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,682 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_259_X10Y3__gate078 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 3,676 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_263_X1Y4__gate102 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 324 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_263_X2Y4__gate085 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 684 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_267_X13Y8__gate030 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,867 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_268_X6Y7__gate044 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,382 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_274_X13Y1__gate008 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 528 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_274_X14Y1__gate013 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 599 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_276_X9Y8__gate052 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,068 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_277_X12Y6__gate042 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 664 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_280_X9Y5__gate072 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,909 T1T2T3T1T2T3T1T2T3 Curated