scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
7,709 Samples
Search
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,709 matches · sample view
Columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,709 matches 7,487 curated Download sample CSV
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_11mm_Human_Colon_Cancer_Fresh_Frozen

Dataset: 10x Genomics Visium HD p2 WholeSlide showcase

Organ: Large intestine

Disease detail: Colorectal cancer

Disease state: Primary cancer

Cells
1,302,549
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Colon_Cancer

Dataset: 10x Genomics Visium HD p2 WholeSlide showcase

Organ: Large intestine

Disease detail: Colorectal cancer

Disease state: Primary cancer

Cells
381,174
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Heart

Dataset: 10x Genomics Visium HD p2 WholeSlide showcase

Organ: Heart

Disease detail: Normal/healthy heart control

Disease state: Healthy/control

Cells
45,616
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer

Dataset: 10x Genomics Visium HD showcase

Organ: Ovary

Disease detail: Ovarian cancer (clear cell adenocarcinoma)

Disease state: Primary cancer

Cells
200,764
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF

Dataset: 10x Genomics Visium HD showcase

Organ: Ovary

Disease detail: Ovarian cancer (papillary serous carcinoma)

Disease state: Primary cancer

Cells
258,911
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth

Dataset: 10x Genomics Visium HD showcase

Organ: Ovary

Disease detail: Ovarian cancer (papillary serous carcinoma)

Disease state: Primary cancer

Cells
258,896
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer

Dataset: 10x Genomics Visium HD showcase

Organ: Pancreas

Disease detail: Pancreatic cancer

Disease state: Primary cancer

Cells
252,214
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.