scAtria single-cell spatial atlas resource

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4,237 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: Spatial transcriptomics × 4,237 matches 4,020 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
BRCA_35063072__MIBI_TOF__Point2307 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 887 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2314 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 642 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2324 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 1,079 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3109 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 518 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4102 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 1,396 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4114 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 914 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4118 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 970 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4142 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 588 T1T2T3T1T2T3T1T2T3 Curated
CosMx1k_Bruker__CosMx_SMI__CosMxLiver1k_Bruker__CancerousLiver Bruker CosMx 1k FFPE showcase Liver Primary cancer CosMx 460,441 Curated
CosMx1k_Bruker__CosMx_SMI__CosMxLiver1k_Bruker__NormalLiver Bruker CosMx 1k FFPE showcase Liver Healthy/control CosMx 332,877 Curated
CosMx64_Bruker__CosMx_SMI_protein__CosMxBreast64_Bruker Bruker CosMx 64-protein FFPE showcase Breast Healthy/control CosMx-P 153,839 Curated
CosMx64_Bruker__CosMx_SMI_protein__CosMxTonsil64_Bruker Bruker CosMx 64-protein FFPE showcase Lymphoid tissue Healthy/control CosMx-P 1,244,918 Curated
CosMx6k_Bruker__CosMx_SMI__CosMxFrontalCortex6k_Bruker Bruker CosMx 6k FFPE showcase Brain Healthy/control CosMx 188,686 Curated
CosMx6k_Bruker__CosMx_SMI__CosMxLymphNode6k_Bruker Bruker CosMx 6k FFPE showcase Lymphoid tissue Healthy/control CosMx 1,852,946 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxBreastCancerMultiWTx_Bruker Bruker CosMx WTx FFPE showcase Breast Primary cancer CosMx 152,451 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxBreastCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Breast Primary cancer CosMx 645,251 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxColonCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Large intestine Primary cancer CosMx 493,834 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxHippocampusWTx_Bruker Bruker CosMx WTx FFPE showcase Brain Healthy/control CosMx 131,568 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxKidneyCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Kidney Primary cancer CosMx 436,787 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxPancreasSmallWTxDown_Bruker Bruker CosMx WTx FFPE showcase Pancreas Healthy/control CosMx 25,304 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxPancreasSmallWTxUp_Bruker Bruker CosMx WTx FFPE showcase Pancreas Healthy/control CosMx 23,640 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxPancreasWTx_Bruker Bruker CosMx WTx FFPE showcase Pancreas Healthy/control CosMx 413,373 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxSkinCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Skin Primary cancer CosMx 555,820 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core1 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 82,298 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core10 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 1,093 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core11 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 1,494 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core12 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 7,974 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core13 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 98,317 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core14 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 102,672 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core15 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 10,266 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core16 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 119,079 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core17 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 111,967 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core18 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 71,612 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core2 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 69,255 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core3 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 63,343 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core4 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 96,331 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core5 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 94,428 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core6 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 3,564 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core7 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 136,328 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core8 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 144,662 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core9 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 85,063 Curated
cHL_41923627__CosMx_SMI__FOV_10_HTMA_528 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 5,666 T1T2T3T1T2T3T1T2T3 Curated
cHL_41923627__CosMx_SMI__FOV_10_TMA_98.3 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 4,825 T1T2T3T1T2T3T1T2T3 Curated
cHL_41923627__CosMx_SMI__FOV_11_HTMA_528 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 5,192 T1T2T3T1T2T3T1T2T3 Curated
cHL_41923627__CosMx_SMI__FOV_13_TMA_98.3 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 7,921 T1T2T3T1T2T3T1T2T3 Curated
cHL_41923627__CosMx_SMI__FOV_14_HTMA_528 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,145 T1T2T3T1T2T3T1T2T3 Curated
cHL_41923627__CosMx_SMI__FOV_14_TMA_98.3 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 6,783 T1T2T3T1T2T3T1T2T3 Curated
cHL_41923627__CosMx_SMI__FOV_15_HTMA_528 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,570 T1T2T3T1T2T3T1T2T3 Curated
cHL_41923627__CosMx_SMI__FOV_15_TMA_98.3 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 7,209 T1T2T3T1T2T3T1T2T3 Curated
cHL_41923627__CosMx_SMI__FOV_16_HTMA_528 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 4,793 T1T2T3T1T2T3T1T2T3 Curated