scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 250 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: Xenium × 250 matches 199 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
GSM9625559_A1R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625559_A1R2 Bladder Primary cancer Xenium 29,816 Source
GSM9625560_A1R4 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625560_A1R4 Bladder Primary cancer Xenium 22,095 Source
GSM9625561_A1R5 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625561_A1R5 Bladder Primary cancer Xenium 42,825 Source
GSM9625562_A1R6 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625562_A1R6 Bladder Primary cancer Xenium 16,587 Source
GSM9625563_A2R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625563_A2R2 Bladder Primary cancer Xenium 20,552 Source
Oral_41663813__Xenium__Oral_41663813_H1 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 16,985 Source
Oral_41663813__Xenium__Oral_41663813_H2a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 14,819 Source
Oral_41663813__Xenium__Oral_41663813_H2b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 5,593 Source
Oral_41663813__Xenium__Oral_41663813_H3a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,247 Source
Oral_41663813__Xenium__Oral_41663813_H3b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,601 Source
Oral_41663813__Xenium__Oral_41663813_H4 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,658 Source
Oral_41663813__Xenium__Oral_41663813_H4a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 13,955 Source
Oral_41663813__Xenium__Oral_41663813_H4b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 18,033 Source
Oral_41663813__Xenium__Oral_41663813_H5 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 23,249 Source
Oral_41663813__Xenium__Oral_41663813_H6 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 18,428 Source
Oral_41663813__Xenium__Oral_41663813_H7a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,191 Source
Oral_41663813__Xenium__Oral_41663813_H7b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 9,998 Source
Oral_41663813__Xenium__Oral_41663813_H8 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 27,704 Source
Oral_41663813__Xenium__Oral_41663813_H9a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 17,161 Source
Oral_41663813__Xenium__Oral_41663813_H9b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 20,980 Source
Oral_41663813__Xenium__Oral_41663813_P1 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 28,555 Source
Oral_41663813__Xenium__Oral_41663813_P10 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 15,455 Source
Oral_41663813__Xenium__Oral_41663813_P12a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 12,788 Source
Oral_41663813__Xenium__Oral_41663813_P12b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 3,793 Source
Oral_41663813__Xenium__Oral_41663813_P13a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 4,674 Source
Oral_41663813__Xenium__Oral_41663813_P13b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 7,208 Source
Oral_41663813__Xenium__Oral_41663813_P13c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 9,146 Source
Oral_41663813__Xenium__Oral_41663813_P14a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 45,548 Source
Oral_41663813__Xenium__Oral_41663813_P14b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 40,763 Source
Oral_41663813__Xenium__Oral_41663813_P15 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 15,682 Source
Oral_41663813__Xenium__Oral_41663813_P2a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 22,328 Source
Oral_41663813__Xenium__Oral_41663813_P2b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 24,866 Source
Oral_41663813__Xenium__Oral_41663813_P2c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 4,112 Source
Oral_41663813__Xenium__Oral_41663813_P2d Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 1,787 Source
Oral_41663813__Xenium__Oral_41663813_P3 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 17,771 Source
Oral_41663813__Xenium__Oral_41663813_P4a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 7,668 Source
Oral_41663813__Xenium__Oral_41663813_P4b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 23,554 Source
Oral_41663813__Xenium__Oral_41663813_P5a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 6,610 Source
Oral_41663813__Xenium__Oral_41663813_P5b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 10,503 Source
Oral_41663813__Xenium__Oral_41663813_P5c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 20,385 Source
Oral_41663813__Xenium__Oral_41663813_P6 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 54,771 Source
Oral_41663813__Xenium__Oral_41663813_P7a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 9,388 Source
Oral_41663813__Xenium__Oral_41663813_P7b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 12,222 Source
Oral_41663813__Xenium__Oral_41663813_P8 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 35,013 Source
Oral_41663813__Xenium__Oral_41663813_P9a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 5,014 Source
Oral_41663813__Xenium__Oral_41663813_P9b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 19,836 Source
Oral_41663813__Xenium__Oral_41663813_P9c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 16,249 Source
Oral_41663813__Xenium__Oral_41663813_P9d Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 1,954 Source
Oral_41663813__Xenium__Oral_41663813_P9e Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 24,232 Source
PDAC_41916312__Xenium__AF-2693_SNV_PDAC_PANCREAS__Region_3 PDAC_41916312 · Xenium Pancreas Primary cancer Xenium 77,695 Source