scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 1,128 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: breast × 1,128 matches 1,128 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP42_10_X1Y5__gate236 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,426 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_113_X2Y5__gate222 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,221 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_120_X5Y2__gate206 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,230 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_120_X6Y2__gate210 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 807 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_121_X11Y8__gate164 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,312 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_123_X8Y6__gate202 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 374 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_127_X2Y8__gate219 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,845 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_12_X12Y8__gate168 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 921 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_130_X1Y6__gate235 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_136_X10Y4__gate179 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 968 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_136_X9Y4__gate178 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,180 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_138_X3Y5__gate228 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,798 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_13_X5Y8__gate188 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,901 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_145_X1Y4__gate248 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,361 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_145_X2Y4__gate237 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 55 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_145_X2Y4__gate238 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 25 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_146_X16Y6__gate142 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_148_X5Y6__gate190 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,821 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_151_X14Y7__gate134 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,006 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_152_X15Y6__gate138 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,518 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_154_X7Y4__gate212 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,277 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_154_X8Y4__gate215 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 645 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_155_X4Y9__gate229 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,585 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_156_X15Y1__gate154 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 342 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_156_X16Y1__gate155 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 692 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_158_X12Y6__gate170 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,213 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_160_X13Y5__gate132 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,045 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_161_X13Y3__gate144 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,899 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_162_X16Y7__gate141 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,143 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_163_X1Y9__gate224 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,690 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_164_X9Y8__gate156 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,719 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_167_X14Y8__gate133 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 351 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_169_X3Y8__gate225 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,455 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_16_X3Y4__gate240 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 523 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_16_X4Y4__gate244 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 221 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_171_X2Y7__gate220 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,801 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_174_X9Y6__gate158 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,567 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_175_X15Y5__gate139 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,329 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_175_X15Y5__gate140 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 668 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_176_X3Y7__gate226 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,769 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_178_X13Y7__gate130 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,966 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_179_X13Y8__gate129 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,186 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_181_X6Y5__gate195 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,992 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_182_X1Y8__gate230 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,667 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_183_X3Y6__gate227 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,236 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_184_X6Y8__gate192 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_185_X7Y5__gate199 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,427 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_188_X10Y5__gate163 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,617 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_189_X5Y5__gate191 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,482 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_190_X9Y5__gate159 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,686 T1T2T3T1T2T3T1T2T3 Curated