scAtria single-cell spatial atlas resource

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Dataset Sample
Card Table
7,709 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 7,709 matches 7,487 curated Download sample CSV
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer

Dataset: 10x Genomics Visium HD showcase

Organ: Breast

Disease detail: Breast cancer

Disease state: Primary cancer

Cells
38,993
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen

Dataset: 10x Genomics Visium HD showcase

Organ: Breast

Disease detail: Breast cancer (invasive ductal carcinoma)

Disease state: Primary cancer

Cells
439,422
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen

Dataset: 10x Genomics Visium HD showcase

Organ: Breast

Disease detail: Breast cancer (ductal carcinoma in situ)

Disease state: Primary cancer

Cells
159,301
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
220,703
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
217,921
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
151,153
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
75,410
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
138,127
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE

Dataset: 10x Genomics Visium HD showcase

Organ: Kidney

Disease detail: Healthy human

Disease state: Healthy/control

Cells
148,056
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen

Dataset: 10x Genomics Visium HD showcase

Organ: Lung

Disease detail: Lung adenocarcinoma

Disease state: Primary cancer

Cells
285,367
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1

Dataset: 10x Genomics Visium HD showcase

Organ: Lung

Disease detail: Lung cancer (invasive acinar adenocarcinoma)

Disease state: Primary cancer

Cells
149,347
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2

Dataset: 10x Genomics Visium HD showcase

Organ: Lung

Disease detail: Lung cancer (invasive acinar adenocarcinoma)

Disease state: Primary cancer

Cells
165,128
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.