scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 381 matches · sample view
Reset
Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
Reset columns
View by dataset
Search: BRCA_31959985 × 381 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
BRCA_31959985__IMC__BaselTMA_SP41_42_X14Y5__gate009 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,719 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_164_X9Y8__gate156 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,719 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_165_X5Y6__gate121 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,708 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_190_X9Y5__gate159 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,686 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_35_X16Y4__gate150 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,684 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_144_X16Y1__gate255 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,678 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_66_X15Y6__gate380 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,646 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_213_X7Y7__gate272 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,638 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_55_X10Y7__gate056 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,635 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_131_X13Y4__gate265 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,633 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_227_X9Y6__gate054 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,631 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_188_X10Y5__gate163 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,617 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate061 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,602 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_224_X3Y7__gate113 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,593 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_26_X16Y5__gate271 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,592 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_119_X9Y8__gate280 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,583 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_3_X13Y6__gate378 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,563 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_279_X14Y6__gate135 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,544 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_196_X5Y7__gate119 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,392 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_153_X7Y5__gate063 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,325 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_253_X14Y2__gate147 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,319 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_105_X10Y1__gate182 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,304 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_221_X2Y7__gate349 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,280 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_154_X7Y4__gate212 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,277 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_57_X8Y6__gate051 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,248 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_284_X7Y2__gate066 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,236 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_158_X12Y6__gate170 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,213 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_88_X11Y5__gate024 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,204 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_30_X9Y3__gate175 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,204 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_84_X7Y1__gate214 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,199 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_24_X6Y2__gate062 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,162 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_110_X14Y8__gate377 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,126 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_278_X4Y2__gate355 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,089 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_29_X7Y2__gate213 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,028 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_143_X2Y2__gate353 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 969 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_136_X10Y4__gate179 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 968 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_194_X11Y7__gate276 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 933 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_12_X12Y8__gate168 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 921 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_116_X14Y4__gate264 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 862 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate045 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 842 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_197_X4Y9__gate339 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 825 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_132_X14Y1__gate252 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 820 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_120_X6Y2__gate210 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 807 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_248_X8Y8__gate279 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 798 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_243_X14Y3__gate261 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 780 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_81_X12Y4__gate187 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 736 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_96_X10Y3__gate180 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 700 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_156_X16Y1__gate155 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 692 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_157_X4Y5__gate369 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 688 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_263_X2Y4__gate085 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 684 T1T2T3T1T2T3T1T2T3