scAtria single-cell spatial atlas resource

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Dataset Sample
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7,730 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 7,730 matches 7,508 curated Download sample CSV
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2

Dataset: 10x Genomics Visium HD showcase

Organ: Lung

Disease detail: Lung cancer (invasive acinar adenocarcinoma)

Disease state: Primary cancer

Cells
155,513
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1

Dataset: 10x Genomics Visium HD showcase

Organ: Lung

Disease detail: Lung cancer (invasive acinar adenocarcinoma)

Disease state: Primary cancer

Cells
159,463
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE

Dataset: 10x Genomics Visium HD showcase

Organ: Lymphoid tissue

Disease detail: Healthy human

Disease state: Healthy/control

Cells
300,211
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF

Dataset: 10x Genomics Visium HD showcase

Organ: Ovary

Disease detail: Ovarian cancer (papillary serous carcinoma)

Disease state: Primary cancer

Cells
183,450
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth

Dataset: 10x Genomics Visium HD showcase

Organ: Ovary

Disease detail: Ovarian cancer (papillary serous carcinoma)

Disease state: Primary cancer

Cells
183,449
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE

Dataset: 10x Genomics Visium HD showcase

Organ: Prostate

Disease detail: Prostate cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
227,257
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen

Dataset: 10x Genomics Visium HD showcase

Organ: Lymphoid tissue

Disease detail: Reactive Follicular Hyperplasia

Disease state: Healthy/control

Cells
959,759
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Breast

Disease detail: Breast cancer

Disease state: Primary cancer

Cells
699,110
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Cervical_Cancer_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Uterus/Cervix

Disease detail: Cervical Cancer

Disease state: Primary cancer

Cells
840,387
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Lung

Disease detail: Lung cancer (invasive acinar adenocarcinoma)

Disease state: Primary cancer

Cells
278,328
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lymph_Node_Reactive_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Lymphoid tissue

Disease detail: Reactive lymph node

Disease state: Non-cancer disease

Cells
708,983
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.