scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
MERFISH / MERSCOPE Spatial transcriptomics

GSM5910320_Panel4_CW20053A-2_i

Sample ID: ASD_42288509__MERFISH__GSM5910320_Panel4_CW20053A-2_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
12,325
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM5910321_Panel4_CW20053A-2_ii

Sample ID: ASD_42288509__MERFISH__GSM5910321_Panel4_CW20053A-2_ii

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
12,854
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM5910322_Panel4_CW60219E-4_i

Sample ID: ASD_42288509__MERFISH__GSM5910322_Panel4_CW60219E-4_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
33,625
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM5910323_Panel4_CW60220F-4_i

Sample ID: ASD_42288509__MERFISH__GSM5910323_Panel4_CW60220F-4_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
14,373
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM5910324_Panel4_CW60219E-4_ii

Sample ID: ASD_42288509__MERFISH__GSM5910324_Panel4_CW60219E-4_ii

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
33,531
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM5910325_Panel4_CW20047D-3_i

Sample ID: ASD_42288509__MERFISH__GSM5910325_Panel4_CW20047D-3_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
4,905
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM5910326_Panel4_CW60040F-4_i

Sample ID: ASD_42288509__MERFISH__GSM5910326_Panel4_CW60040F-4_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
21,140
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709892_Panel1_CW20047D-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709892_Panel1_CW20047D-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
20,654
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709893_Panel1_CW20047D-1_ii

Sample ID: ASD_42288509__MERFISH__GSM7709893_Panel1_CW20047D-1_ii

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
10,126
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709894_Panel1_CW60218E-3_i

Sample ID: ASD_42288509__MERFISH__GSM7709894_Panel1_CW60218E-3_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
8,666
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709895_Panel1_CW20050D-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709895_Panel1_CW20050D-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
40,435
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709896_Panel1_CW60230E-3_i

Sample ID: ASD_42288509__MERFISH__GSM7709896_Panel1_CW60230E-3_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
34,692
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.