scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709897_Panel1_CW20051C-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709897_Panel1_CW20051C-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
7,432
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709898_Panel1_CW60115F-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709898_Panel1_CW60115F-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
17,873
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709899_Panel1_CW60171E-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709899_Panel1_CW60171E-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
19,283
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709900_Panel1_CW20320C-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709900_Panel1_CW20320C-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
26,829
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709901_Panel1_CW20324C-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709901_Panel1_CW20324C-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
11,540
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709902_Panel1_CW60108A-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709902_Panel1_CW60108A-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
6,987
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709903_Panel1_CW60134F-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709903_Panel1_CW60134F-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
23,983
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709904_Panel1_CW60228D-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709904_Panel1_CW60228D-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
15,182
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709905_Panel1_CW20081F-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709905_Panel1_CW20081F-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
25,765
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709906_Panel1_CW60109C-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709906_Panel1_CW60109C-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
11,635
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709907_Panel1_CW60171E-2_i

Sample ID: ASD_42288509__MERFISH__GSM7709907_Panel1_CW60171E-2_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
28,490
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709908_Panel1_CW20324C-1_ii

Sample ID: ASD_42288509__MERFISH__GSM7709908_Panel1_CW20324C-1_ii

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
19,501
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.