scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
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7,721 Samples
Search ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 7,721 matches 7,508 curated Download sample CSV
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709909_Panel1_CW20041A-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709909_Panel1_CW20041A-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
40,008
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709910_Panel1_CW20002A-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709910_Panel1_CW20002A-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
17,599
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709911_Panel1_CW60109C-2_i

Sample ID: ASD_42288509__MERFISH__GSM7709911_Panel1_CW60109C-2_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
34,662
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709912_Panel1_CW60172A-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709912_Panel1_CW60172A-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
5,960
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM7709913_Panel1_CW60245L-1_i

Sample ID: ASD_42288509__MERFISH__GSM7709913_Panel1_CW60245L-1_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
26,197
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM8291572_Panel1_CW20047D-2_i

Sample ID: ASD_42288509__MERFISH__GSM8291572_Panel1_CW20047D-2_i

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
36,027
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

GSM8291573_Panel1_CW60171E-2_ii

Sample ID: ASD_42288509__MERFISH__GSM8291573_Panel1_CW60171E-2_ii

Dataset: ASD_42288509 · MERFISH / MERSCOPE

Organ: Brain

Disease detail: Autism spectrum disorder cortical organoid model

Disease state: Non-cancer disease

Cells
34,182
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

GSM8876962_slide_13

Sample ID: CRC_42167227__CosMx_SMI__P10_On_slide_13

Dataset: CRC_42167227 · CosMx SMI / NanoString SMI

Organ: Liver

Disease detail: Metastatic colorectal cancer

Disease state: Metastatic cancer

Cells
6,297
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

GSM8876956_slide_7

Sample ID: CRC_42167227__CosMx_SMI__P10_On_slide_7

Dataset: CRC_42167227 · CosMx SMI / NanoString SMI

Organ: Liver

Disease detail: Metastatic colorectal cancer

Disease state: Metastatic cancer

Cells
4,188
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

GSM8876959_slide_10

Sample ID: CRC_42167227__CosMx_SMI__P10_Pre_slide_10

Dataset: CRC_42167227 · CosMx SMI / NanoString SMI

Organ: Liver

Disease detail: Metastatic colorectal cancer

Disease state: Metastatic cancer

Cells
63,964
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

GSM8876962_slide_13

Sample ID: CRC_42167227__CosMx_SMI__P11_On_slide_13

Dataset: CRC_42167227 · CosMx SMI / NanoString SMI

Organ: Liver

Disease detail: Metastatic colorectal cancer

Disease state: Metastatic cancer

Cells
22,052
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

GSM8876954_slide_5

Sample ID: CRC_42167227__CosMx_SMI__P11_On_slide_5

Dataset: CRC_42167227 · CosMx SMI / NanoString SMI

Organ: Liver

Disease detail: Metastatic colorectal cancer

Disease state: Metastatic cancer

Cells
20,282
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.