scAtria single-cell spatial atlas resource

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Dataset Sample
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7,730 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 7,730 matches 7,508 curated Download sample CSV
PCF / CODEX / PhenoCycler Fusion Spatial proteomics

6 pcw selected area

Sample ID: DevelopingLung_39477961__PCF_CODEX__6w_selectedarea

Dataset: DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion

Organ: Lung

Disease detail: Developing healthy lung

Disease state: Healthy/control

Cells
13,167
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics

8.5 pcw selected area

Sample ID: DevelopingLung_39477961__PCF_CODEX__8.5w_selectedarea

Dataset: DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion

Organ: Lung

Disease detail: Developing healthy lung

Disease state: Healthy/control

Cells
23,296
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

DLBCL_41120574__CosMx_SMI__F1_6

Dataset: DLBCL_41120574 · CosMx SMI / NanoString SMI

Organ: Lymphoid tissue

Disease detail: Diffuse large B-cell lymphoma

Disease state: Primary cancer

Cells
155,694
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

DLBCL_41120574__CosMx_SMI__F2_1

Dataset: DLBCL_41120574 · CosMx SMI / NanoString SMI

Organ: Lymphoid tissue

Disease detail: Diffuse large B-cell lymphoma

Disease state: Primary cancer

Cells
1,551,666
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

DLBCL_41120574__CosMx_SMI__F3_1

Dataset: DLBCL_41120574 · CosMx SMI / NanoString SMI

Organ: Lymphoid tissue

Disease detail: Diffuse large B-cell lymphoma

Disease state: Primary cancer

Cells
1,169,484
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

DLBCL_41120574__CosMx_SMI__F4_1

Dataset: DLBCL_41120574 · CosMx SMI / NanoString SMI

Organ: Lymphoid tissue

Disease detail: Diffuse large B-cell lymphoma

Disease state: Primary cancer

Cells
332,122
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

DLBCL_41120574__CosMx_SMI__F5_5

Dataset: DLBCL_41120574 · CosMx SMI / NanoString SMI

Organ: Lymphoid tissue

Disease detail: Diffuse large B-cell lymphoma

Disease state: Primary cancer

Cells
135,185
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

DLBCL_41120574__CosMx_SMI__F6_3

Dataset: DLBCL_41120574 · CosMx SMI / NanoString SMI

Organ: Lymphoid tissue

Disease detail: Diffuse large B-cell lymphoma

Disease state: Primary cancer

Cells
167,868
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI Protein Spatial proteomics

GBM_40972572__CosMx_SMI_protein__UM02

Dataset: GBM_40972572 · CosMx SMI Protein

Organ: Brain

Disease detail: Glioblastoma

Disease state: Primary cancer

Cells
79,153
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI Protein Spatial proteomics

GBM_40972572__CosMx_SMI_protein__UM04

Dataset: GBM_40972572 · CosMx SMI Protein

Organ: Brain

Disease detail: Glioblastoma

Disease state: Primary cancer

Cells
42,658
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI Protein Spatial proteomics

GBM_40972572__CosMx_SMI_protein__UM06-P

Dataset: GBM_40972572 · CosMx SMI Protein

Organ: Brain

Disease detail: Glioblastoma

Disease state: Primary cancer

Cells
105,034
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI Protein Spatial proteomics

GBM_40972572__CosMx_SMI_protein__UM07-R

Dataset: GBM_40972572 · CosMx SMI Protein

Organ: Brain

Disease detail: Glioblastoma

Disease state: Primary cancer

Cells
12,591
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.