scAtria single-cell spatial atlas resource

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Dataset Sample
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7,730 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 7,730 matches 7,508 curated Download sample CSV
CosMx SMI / NanoString SMI Spatial transcriptomics

HGSOC_38570491__CosMx_SMI__HGSOC_38570491_SP5_Run5452_S2

Dataset: HGSOC_38570491 · CosMx SMI / NanoString SMI

Organ: Ovary

Disease detail: High-grade serous carcinoma

Disease state: Primary cancer

Cells
39,959
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

IgAN_38898271__Xenium__GSM8216268

Dataset: IgAN_38898271 · Xenium

Organ: Kidney

Disease detail: IgA nephropathy

Disease state: Non-cancer disease

Cells
30,802
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

Liver_41986723__MERFISH__M5

Dataset: Liver_41986723 · MERFISH / MERSCOPE

Organ: Liver

Disease detail: normal/healthy liver control

Disease state: Healthy/control

Cells
102,914
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
MERFISH / MERSCOPE Spatial transcriptomics

Liver_41986723__MERFISH__M8

Dataset: Liver_41986723 · MERFISH / MERSCOPE

Organ: Liver

Disease detail: normal/healthy liver control

Disease state: Healthy/control

Cells
207,498
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

Melanoma_40457060__CosMx_SMI__Tumor_1

Dataset: Melanoma_40457060 · CosMx SMI / NanoString SMI

Organ: Skin

Disease detail: Melanoma

Disease state: Primary cancer

Cells
16,214
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

Melanoma_40457060__CosMx_SMI__Tumor_2

Dataset: Melanoma_40457060 · CosMx SMI / NanoString SMI

Organ: Skin

Disease detail: Melanoma

Disease state: Primary cancer

Cells
2,248
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

GSM9625559_A1R2

Sample ID: MIBC_42126225__Xenium__GSM9625559_A1R2

Dataset: MIBC_42126225 · Xenium

Organ: Bladder

Disease detail: Muscle-invasive bladder cancer

Disease state: Primary cancer

Cells
29,816
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

GSM9625560_A1R4

Sample ID: MIBC_42126225__Xenium__GSM9625560_A1R4

Dataset: MIBC_42126225 · Xenium

Organ: Bladder

Disease detail: Muscle-invasive bladder cancer

Disease state: Primary cancer

Cells
22,095
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

GSM9625561_A1R5

Sample ID: MIBC_42126225__Xenium__GSM9625561_A1R5

Dataset: MIBC_42126225 · Xenium

Organ: Bladder

Disease detail: Muscle-invasive bladder cancer

Disease state: Primary cancer

Cells
42,825
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

GSM9625562_A1R6

Sample ID: MIBC_42126225__Xenium__GSM9625562_A1R6

Dataset: MIBC_42126225 · Xenium

Organ: Bladder

Disease detail: Muscle-invasive bladder cancer

Disease state: Primary cancer

Cells
16,587
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

GSM9625563_A2R2

Sample ID: MIBC_42126225__Xenium__GSM9625563_A2R2

Dataset: MIBC_42126225 · Xenium

Organ: Bladder

Disease detail: Muscle-invasive bladder cancer

Disease state: Primary cancer

Cells
20,552
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

NSCLC_40220761__CosMx_SMI__Section_04

Dataset: NSCLC_40220761 · CosMx SMI / NanoString SMI

Organ: Lung

Disease detail: Non-small cell lung cancer

Disease state: Primary cancer

Cells
58,805
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.