scAtria single-cell spatial atlas resource

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Dataset Sample
Card Table
7,730 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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CosMx SMI / NanoString SMI Spatial transcriptomics

NSCLC_40220761__CosMx_SMI__Section_10

Dataset: NSCLC_40220761 · CosMx SMI / NanoString SMI

Organ: Lung

Disease detail: Non-small cell lung cancer

Disease state: Primary cancer

Cells
58,228
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

NSCLC_40220761__CosMx_SMI__Section_16

Dataset: NSCLC_40220761 · CosMx SMI / NanoString SMI

Organ: Lung

Disease detail: Non-small cell lung cancer

Disease state: Primary cancer

Cells
57,435
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

NSCLC_40220761__CosMx_SMI__Section_22

Dataset: NSCLC_40220761 · CosMx SMI / NanoString SMI

Organ: Lung

Disease detail: Non-small cell lung cancer

Disease state: Primary cancer

Cells
59,208
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

NSCLC_40220761__CosMx_SMI__Section_28

Dataset: NSCLC_40220761 · CosMx SMI / NanoString SMI

Organ: Lung

Disease detail: Non-small cell lung cancer

Disease state: Primary cancer

Cells
59,564
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

NSCLC_40220761__CosMx_SMI__Section_34

Dataset: NSCLC_40220761 · CosMx SMI / NanoString SMI

Organ: Lung

Disease detail: Non-small cell lung cancer

Disease state: Primary cancer

Cells
56,959
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_H1

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Oral health

Disease state: Healthy/control

Cells
16,985
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_H2a

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Oral health

Disease state: Healthy/control

Cells
14,819
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_H2b

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Oral health

Disease state: Healthy/control

Cells
5,593
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_H3a

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Oral health

Disease state: Healthy/control

Cells
4,247
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_H3b

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Oral health

Disease state: Healthy/control

Cells
4,601
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_H4

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Oral health

Disease state: Healthy/control

Cells
6,658
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_H4a

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Oral health

Disease state: Healthy/control

Cells
13,955
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.