scAtria single-cell spatial atlas resource

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Dataset Sample
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7,709 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_P9b

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Periodontitis

Disease state: Non-cancer disease

Cells
19,836
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_P9c

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Periodontitis

Disease state: Non-cancer disease

Cells
16,249
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_P9d

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Periodontitis

Disease state: Non-cancer disease

Cells
1,954
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

Oral_41663813__Xenium__Oral_41663813_P9e

Dataset: Oral_41663813 · Xenium

Organ: Head and neck

Disease detail: Periodontitis

Disease state: Non-cancer disease

Cells
24,232
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics

PDAC_41916312__Xenium__AF-2693_SNV_PDAC_PANCREAS__Region_3

Dataset: PDAC_41916312 · Xenium

Organ: Pancreas

Disease detail: Pancreatic ductal adenocarcinoma

Disease state: Primary cancer

Cells
77,695
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F001

Dataset: RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

Organ: Musculoskeletal

Disease detail: Rheumatoid arthritis (active)

Disease state: Non-cancer disease

Cells
2,766
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F002

Dataset: RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

Organ: Musculoskeletal

Disease detail: Rheumatoid arthritis (active)

Disease state: Non-cancer disease

Cells
1,617
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F003

Dataset: RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

Organ: Musculoskeletal

Disease detail: Rheumatoid arthritis (active)

Disease state: Non-cancer disease

Cells
1,762
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F004

Dataset: RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

Organ: Musculoskeletal

Disease detail: Rheumatoid arthritis (active)

Disease state: Non-cancer disease

Cells
3,143
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F005

Dataset: RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

Organ: Musculoskeletal

Disease detail: Rheumatoid arthritis (active)

Disease state: Non-cancer disease

Cells
2,691
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F006

Dataset: RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

Organ: Musculoskeletal

Disease detail: Rheumatoid arthritis (active)

Disease state: Non-cancer disease

Cells
1,625
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics

RheumatoidArthritis_39609125__CosMx_SMI__Run5654_399G0_32G77_F007

Dataset: RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

Organ: Musculoskeletal

Disease detail: Rheumatoid arthritis (active)

Disease state: Non-cancer disease

Cells
1,701
Curation
Source
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.