scAtria single-cell spatial atlas resource

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Dataset Sample
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94 Datasets
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 94 matches 80 curated
Xenium Spatial transcriptomics Curated

Xenium Human Breast Gene Expression Panel 10x Genomics showcase

Dataset key: XeniumBreast_10xGenomics__Xenium

Breast 6

Disease detail: Primary cancer: Breast cancer (invasive ductal carcinoma)

Primary cancer 6
Samples
6
Cells
3,652,654
Curation
Curated
DEG
NA
Spatial
0/6
Open dataset
Xenium Spatial transcriptomics Curated

Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase

Dataset key: XeniumBreastJanesick_10xGenomics__Xenium

Breast 12

Disease detail: Primary cancer: Breast cancer (DCIS, ER+/PR+/HER2-2+), Healthy/control: Healthy human

Primary cancer 11/12 Healthy/control 1/12
Samples
12
Cells
3,442,976
Curation
Curated
DEG
NA
Spatial
0/12
Open dataset
Xenium Spatial transcriptomics Curated

Xenium Human Lung Gene Expression Panel showcase

Dataset key: XeniumLung_10xGenomics__Xenium

Lung 3

Disease detail: Primary cancer: Lung cancer (invasive acinar adenocarcinoma), Healthy/control: Healthy human

Primary cancer 2/3 Healthy/control 1/3
Samples
3
Cells
1,105,707
Curation
Curated
DEG
NA
Spatial
0/3
Open dataset
Xenium Spatial transcriptomics Curated

Xenium Human Multi-Tissue and Cancer Panel showcase

Dataset key: XeniumMulti_10xGenomics__Xenium

Bone marrow 2/20 Heart 1/20 Kidney 3/20 Liver 2/20 Lung 2/20 Lymphoid tissue 3/20 Musculoskeletal 1/20 Ovary 1/20 Pancreas 3/20 Skin 2/20

Disease detail: Healthy/control: Healthy human, Primary cancer: Lung cancer, Non-cancer disease: Follicular lymphoid hyperplasia

Healthy/control 9/20 Primary cancer 9/20 Non-cancer disease 2/20
Samples
20
Cells
5,095,938
Curation
Curated
DEG
NA
Spatial
0/20
Open dataset
CosMx SMI / NanoString SMI Spatial transcriptomics Curated

cHL_41923627 · CosMx SMI / NanoString SMI

Dataset key: cHL_41923627__CosMx_SMI

Lymphoid tissue 43

Disease detail: Primary cancer: Classical Hodgkin lymphoma

Primary cancer 43
Samples
43
Cells
266,199
Curation
Curated
DEG
NA
Spatial
17/43
Open dataset
MIBI-TOF / Multiplexed Ion Beam Imaging Spatial proteomics Curated

cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging

Dataset key: cHL_41923627__MIBI_TOF

Lymphoid tissue 9

Disease detail: Primary cancer: Classical Hodgkin lymphoma

Primary cancer 9
Samples
9
Cells
1,409,210
Curation
Curated
DEG
NA
Spatial
0/9
Open dataset
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

cHL_41923627 · PCF / CODEX / PhenoCycler Fusion

Dataset key: cHL_41923627__PCF_CODEX

Lymphoid tissue 27

Disease detail: Primary cancer: Classical Hodgkin lymphoma

Primary cancer 27
Samples
27
Cells
934,478
Curation
Curated
DEG
NA
Spatial
0/27
Open dataset
MERFISH / MERSCOPE Spatial transcriptomics

ASD_42288509 · MERFISH / MERSCOPE

Dataset key: ASD_42288509__MERFISH

Brain 71

Disease detail: Non-cancer disease: Autism spectrum disorder cortical organoid model

Non-cancer disease 71
Samples
71
Cells
1,515,114
Curation
Source
DEG
NA
Spatial
0/71
Open dataset
CosMx SMI / NanoString SMI Spatial transcriptomics

CRC_42167227 · CosMx SMI / NanoString SMI

Dataset key: CRC_42167227__CosMx_SMI

Large intestine 14

Disease detail: Primary cancer: Colorectal cancer

Primary cancer 14
Samples
14
Cells
1,901,559
Curation
Source
DEG
NA
Spatial
0/14
Open dataset
CosMx SMI / NanoString SMI Spatial transcriptomics

DLBCL_41120574 · CosMx SMI / NanoString SMI

Dataset key: DLBCL_41120574__CosMx_SMI

Lymphoid tissue 6

Disease detail: Primary cancer: Diffuse large B-cell lymphoma

Primary cancer 6
Samples
6
Cells
3,512,019
Curation
Source
DEG
NA
Spatial
0/6
Open dataset
PCF / CODEX / PhenoCycler Fusion Spatial proteomics

DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion

Dataset key: DevelopingLung_39477961__PCF_CODEX

Lung 5

Disease detail: Healthy/control: Developing healthy lung

Healthy/control 5
Samples
5
Cells
971,112
Curation
Source
DEG
NA
Spatial
0/5
Open dataset