scAtria single-cell spatial atlas resource

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Dataset Sample
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7,709 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Ovary

Disease detail: Ovarian cancer (papillary serous carcinoma)

Disease state: Primary cancer

Cells
200,900
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_FF

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Ovary

Disease detail: Ovarian cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
1,157,659
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Prostate

Disease detail: Prostate cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
193,000
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Skin

Disease detail: Melanoma

Disease state: Primary cancer

Cells
112,551
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Ovarian_Cancer_FFPE_XRrun

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Ovary

Disease detail: Ovarian cancer (papillary serous carcinoma)

Disease state: Primary cancer

Cells
407,124
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg001

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
148,293
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg002

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
172,066
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg003

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
152,635
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg004

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
46,106
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg005

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
98,101
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg006

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
127,265
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_2reg001

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
206,365
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.