scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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SearchFiltered ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
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Search: Spatial transcriptomics × 4,228 matches 4,020 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
SpinalCord_38513664__ISS__EAE_EARLY_SO_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,875 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_SO_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,919 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_SO_L_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,731 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_C_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 9,804 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_C_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 7,766 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_C_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 8,832 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,525 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,270 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,758 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_B_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 34,541 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_B_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 39,215 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_B_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 39,814 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_B_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 54,943 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_C_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 7,429 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_C_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 8,366 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_C_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,483 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_C_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 10,013 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 11,651 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 9,269 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 11,418 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_L_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 9,265 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_T_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,626 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_T_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,288 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_T_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,124 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_T_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,957 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__Xenium__CTRL1 SpinalCord_38513664 · Xenium Spinal cord Healthy/control Xenium 95,825 Curated
SpinalCord_38513664__Xenium__CTRL2 SpinalCord_38513664 · Xenium Spinal cord Healthy/control Xenium 99,682 Curated
SpinalCord_38513664__Xenium__MSa1 SpinalCord_38513664 · Xenium Spinal cord Non-cancer disease Xenium 133,864 Curated
SpinalCord_38513664__Xenium__MSa2 SpinalCord_38513664 · Xenium Spinal cord Non-cancer disease Xenium 75,598 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__Xenium__MSi1 SpinalCord_38513664 · Xenium Spinal cord Non-cancer disease Xenium 152,508 Curated
SpinalCord_38513664__Xenium__MSi2 SpinalCord_38513664 · Xenium Spinal cord Non-cancer disease Xenium 103,324 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV1 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,113 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV10 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,674 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV11 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,158 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV12 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,267 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV13 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,705 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV14 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 998 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV15 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,168 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV16 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,331 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV17 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,806 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV18 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,188 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV19 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,269 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV2 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,495 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV20 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 3,351 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV21 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 656 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV22 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,445 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV24 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,815 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV25 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 708 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV26 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,303 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV27 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,985 T1T2T3T1T2T3T1T2T3 Curated