scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
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Search: BRCA_35122013 × 548 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
BRCA_35122013__IMC__MB-0571__core1__image434 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 681 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0573__core1__image352 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 670 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0518__core1__image216 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 662 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0612__core1__image491 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 658 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0538__core1__image121 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 654 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0659__core1__image361 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 654 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0218__core1__image113 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 653 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0589__core2__image505 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 652 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0585__core1__image110 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 650 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0301__core1__image325 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 642 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0441__core1__image163 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 642 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0500__core1__image233 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 642 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0344__core1__image363 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 639 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0668__core1__image118 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 638 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0605__core1__image256 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 634 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0268__core1__image385 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 633 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0548__core1__image18 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 633 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0177__core1__image52 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 630 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0208__core1__image334 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 625 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0431__core1__image29 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 623 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0290__core1__image481 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 622 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0220__core1__image305 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 620 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0294__core1__image395 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 617 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0022__core1__image456 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 613 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0531__core1__image441 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 607 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0455__core1__image343 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 605 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0427__core1__image146 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 601 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0404__core1__image251 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 600 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0480__core1__image463 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 593 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0120__core1__image462 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 592 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0144__core1__image552 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 591 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0589__core1__image342 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 590 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0890__core1__image427 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 589 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0201__core1__image497 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 580 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0378__core1__image312 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 580 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0224__core1__image531 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 568 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0280__core1__image406 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 568 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0663__core1__image394 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 567 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0913__core1__image338 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 565 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0549__core2__image547 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 560 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0367__core1__image330 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 552 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0134__core1__image396 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 548 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0264__core1__image471 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 548 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0221__core1__image105 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 546 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0305__core1__image11 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 546 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0891__core1__image278 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 540 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0370__core1__image275 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 538 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0444__core1__image139 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 537 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0510__core1__image259 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 537 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0420__core1__image181 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 532 T1T2T3T1T2T3T1T2T3