scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
4,237 Samples
SearchFiltered
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 4,237 matches · sample view
Reset
Columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Search: Spatial transcriptomics × 4,237 matches 4,020 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV8 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,527 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV80 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 3,145 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV81 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,834 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV9 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 870 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV1 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,964 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV11 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,257 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV13 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 3,170 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV14 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 3,475 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV15 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,946 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV16 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,666 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV17 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,829 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV18 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,527 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV19 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,355 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV2 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,864 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV20 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 3,271 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV21 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 5,165 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV3 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 3,697 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV4 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 5,284 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV5 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,446 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV6 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 6,271 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV9 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,192 T1T2T3T1T2T3T1T2T3 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Alzheimers_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Healthy/control Xenium 44,955 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Glioblastoma_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Primary cancer Xenium 40,887 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Healthy_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Non-cancer disease Xenium 24,406 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 574,852 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_1 Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 892,966 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_2 Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 885,523 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_With_Addon Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 576,963 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 356,746 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC_With_Addon Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 365,604 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 254,480 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 375,529 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 209,467 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 358,519 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 380,739 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Healthy/control Xenium 301,854 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 150,145 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 373,150 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 308,531 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 201,955 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 335,709 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 192,898 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Brain_GBM_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Brain Primary cancer Xenium 816,769 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Colorectal_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Large intestine Primary cancer Xenium 388,175 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ductal_Adenocarcinoma_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Pancreas Primary cancer Xenium 235,099 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Lung Primary cancer Xenium 161,000 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ovarian_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Ovary Primary cancer Xenium 247,636 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Lung_Cancer_With_Add_on_2_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 531,165 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Non_diseased_Lung_With_Add_on_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Healthy/control Xenium 295,883 Curated
XeniumLung_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 278,659 Curated