scAtria single-cell spatial atlas resource

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4,237 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: Spatial transcriptomics × 4,237 matches 4,020 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
GSM8876959_slide_10 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876959_slide_10 Large intestine Primary cancer CosMx 185,327 Source
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876960_slide_11 Large intestine Primary cancer CosMx 52,500 Source
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876961_slide_12 Large intestine Primary cancer CosMx 583,620 Source
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876962_slide_13 Large intestine Primary cancer CosMx 76,057 Source
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876963_slide_14 Large intestine Primary cancer CosMx 139,157 Source
DLBCL_41120574__CosMx_SMI__F1_6 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 155,694 Source
DLBCL_41120574__CosMx_SMI__F2_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,551,666 Source
DLBCL_41120574__CosMx_SMI__F3_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,169,484 Source
DLBCL_41120574__CosMx_SMI__F4_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 332,122 Source
DLBCL_41120574__CosMx_SMI__F5_5 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 135,185 Source
DLBCL_41120574__CosMx_SMI__F6_3 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 167,868 Source
GBM_40972572__CosMx_SMI_protein__UM02 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 79,153 Source
GBM_40972572__CosMx_SMI_protein__UM04 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 42,658 Source
GBM_40972572__CosMx_SMI_protein__UM06-P GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 105,034 Source
GBM_40972572__CosMx_SMI_protein__UM07-R GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 12,591 Source
HGSOC_38570491__CosMx_SMI__HGSOC_38570491_SP5_Run5452_S2 HGSOC_38570491 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 39,959 Source
IgAN_38898271__Xenium__GSM8216268 IgAN_38898271 · Xenium Kidney Non-cancer disease Xenium 30,802 Source
Liver_41986723__MERFISH__M5 Liver_41986723 · MERFISH / MERSCOPE Liver Healthy/control MERFISH 102,914 Source
Liver_41986723__MERFISH__M8 Liver_41986723 · MERFISH / MERSCOPE Liver Healthy/control MERFISH 207,498 Source
Melanoma_40457060__CosMx_SMI__Tumor_1 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 16,214 Source
Melanoma_40457060__CosMx_SMI__Tumor_2 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 2,248 Source
GSM9625559_A1R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625559_A1R2 Bladder Primary cancer Xenium 29,816 Source
GSM9625560_A1R4 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625560_A1R4 Bladder Primary cancer Xenium 22,095 Source
GSM9625561_A1R5 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625561_A1R5 Bladder Primary cancer Xenium 42,825 Source
GSM9625562_A1R6 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625562_A1R6 Bladder Primary cancer Xenium 16,587 Source
GSM9625563_A2R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625563_A2R2 Bladder Primary cancer Xenium 20,552 Source
NSCLC_40220761__CosMx_SMI__Section_04 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 58,805 Source
NSCLC_40220761__CosMx_SMI__Section_10 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 58,228 Source
NSCLC_40220761__CosMx_SMI__Section_16 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 57,435 Source
NSCLC_40220761__CosMx_SMI__Section_22 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 59,208 Source
NSCLC_40220761__CosMx_SMI__Section_28 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 59,564 Source
NSCLC_40220761__CosMx_SMI__Section_34 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 56,959 Source
Oral_41663813__Xenium__Oral_41663813_H1 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 16,985 Source
Oral_41663813__Xenium__Oral_41663813_H2a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 14,819 Source
Oral_41663813__Xenium__Oral_41663813_H2b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 5,593 Source
Oral_41663813__Xenium__Oral_41663813_H3a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,247 Source
Oral_41663813__Xenium__Oral_41663813_H3b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,601 Source
Oral_41663813__Xenium__Oral_41663813_H4 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,658 Source
Oral_41663813__Xenium__Oral_41663813_H4a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 13,955 Source
Oral_41663813__Xenium__Oral_41663813_H4b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 18,033 Source
Oral_41663813__Xenium__Oral_41663813_H5 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 23,249 Source
Oral_41663813__Xenium__Oral_41663813_H6 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 18,428 Source
Oral_41663813__Xenium__Oral_41663813_H7a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,191 Source
Oral_41663813__Xenium__Oral_41663813_H7b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 9,998 Source
Oral_41663813__Xenium__Oral_41663813_H8 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 27,704 Source
Oral_41663813__Xenium__Oral_41663813_H9a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 17,161 Source
Oral_41663813__Xenium__Oral_41663813_H9b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 20,980 Source
Oral_41663813__Xenium__Oral_41663813_P1 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 28,555 Source
Oral_41663813__Xenium__Oral_41663813_P10 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 15,455 Source
Oral_41663813__Xenium__Oral_41663813_P12a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 12,788 Source