scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
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Search: BRCA_35122013 × 548 matches 548 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35122013__IMC__MB-0529__core1__image399 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 727 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0530__core1__image348 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,134 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0531__core1__image441 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 607 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0532__core1__image125 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,109 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0536__core1__image284 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,023 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0537__core1__image488 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,110 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0538__core1__image121 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 654 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0538__core2__image150 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,384 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0542__core1__image160 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,599 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0543__core1__image522 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 862 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0544__core1__image168 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,489 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0545__core1__image356 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 798 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0547__core1__image46 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 267 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0547__core1__image486 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0548__core1__image18 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 633 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0549__core1__image188 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 729 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0549__core2__image547 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 560 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0552__core1__image8 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,072 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0553__core1__image508 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 745 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0554__core1__image290 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 138 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0555__core1__image41 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 172 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0555__core1__image64 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 230 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0556__core1__image377 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 517 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0557__core1__image299 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 880 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0558__core1__image365 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 67 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0559__core1__image159 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 390 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0559__core1__image174 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0562__core1__image180 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,266 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0563__core1__image9 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,247 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0565__core1__image373 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,231 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0568__core1__image204 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,181 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0569__core1__image248 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 926 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0570__core1__image465 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,544 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0571__core1__image434 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 681 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0573__core1__image352 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 670 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0574__core1__image199 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,375 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0575__core1__image191 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,812 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0576__core1__image177 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,308 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0577__core1__image100 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 282 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0578__core1__image161 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,604 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0579__core1__image198 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,787 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0580__core1__image190 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,632 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0581__core1__image175 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,658 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0582__core1__image154 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,791 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0583__core1__image133 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 274 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0583__core1__image134 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 686 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0583__core2__image207 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,158 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0584__core1__image22 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,078 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0585__core1__image110 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 650 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0586__core1__image444 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 856 T1T2T3T1T2T3T1T2T3 Curated