scAtria single-cell spatial atlas resource

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594 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: NormalSkin_41872488 × 594 matches 572 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
UCSF2018-003-MFG Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__UCSF2018-003-MFG Brain Healthy/control MERFISH 47,632 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202304121534_MSSM-Ji-Skin3-VA227_VMSC02701_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 103,786 Curated
NormalSkin_41872488__MERFISH__202304141439_MSSM-Ji-Skin2-VA227_VMSC02701_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 71,958 Curated
NormalSkin_41872488__MERFISH__202306070957_AH21-NSFFPE-060723-AH_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 34,056 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202306121431_AH21-NS-ConcClear-061223_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 48,053 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202308311115_D041-43--lastprobes-083123_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 59,743 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202309281027_AutopsyBFFPE092823_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 7,047 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202309281027_AutopsyBFFPE092823_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 11,293 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202309281027_AutopsyBFFPE092823_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 8,370 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202309281027_AutopsyBFFPE092823_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 6,986 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202310301133_D082--1-4--10302023_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,414 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202310301133_D082--1-4--10302023_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 7,538 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202310301133_D082--1-4--10302023_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 10,700 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202310301133_D082--1-4--10302023_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 12,166 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202311011251_D082--5-8--11012023_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 1,856 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202311011251_D082--5-8--11012023_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,012 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202311011251_D082--5-8--11012023_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 6,301 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202311011251_D082--5-8--11012023_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 6,879 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202312131041_D077--1-4--12132023_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,378 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202312131041_D077--1-4--12132023_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 10,476 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202312131041_D077--1-4--12132023_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 14,572 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202312131041_D077--1-4--12132023_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 24,738 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202312180956_D077--5-8--12182023_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,365 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202312180956_D077--5-8--12182023_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 7,641 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202312180956_D077--5-8--12182023_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 2,431 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202312180956_D077--5-8--12182023_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 1,851 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 7,026 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 8,078 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,716 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 24,405 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 23,992 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 12,043 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403121435_D107--1-6--03122024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,127 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403121435_D107--1-6--03122024_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 3,323 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403121435_D107--1-6--03122024_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 3,518 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403121435_D107--1-6--03122024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 8,064 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403121435_D107--1-6--03122024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 10,781 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403121435_D107--1-6--03122024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 7,335 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403151059_D151--7-12--03152024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,950 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403151059_D151--7-12--03152024_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 6,709 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403151059_D151--7-12--03152024_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 3,881 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403151059_D151--7-12--03152024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 7,029 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403151059_D151--7-12--03152024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,429 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403151059_D151--7-12--03152024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 3,086 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403180949_D107--7-12--03182024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 12,491 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403180949_D107--7-12--03182024_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,119 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403180949_D107--7-12--03182024_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 2,811 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403180949_D107--7-12--03182024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,954 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403180949_D107--7-12--03182024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 8,453 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202403180949_D107--7-12--03182024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,349 T1T2T3T1T2T3T1T2T3 Curated