scAtria single-cell spatial atlas resource

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67 Datasets
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: CervicalCancer_CmTSA_41807362 × 67 matches 59 curated
CmTSA Spatial proteomics Curated

CervicalCancer_CmTSA_41807362

Dataset key: CervicalCancer_CmTSA_41807362__CmTSA

Uterus/Cervix 2

Disease detail: Primary cancer: Cervical cancer

Primary cancer 2
Samples
2
Cells
1,564,537
Curation
Curated
DEG
NA
Spatial
0/2
Open dataset
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

CML_41592325 · PCF / CODEX / PhenoCycler Fusion

Dataset key: CML_41592325__PCF_CODEX

Bone marrow 55

Disease detail: Primary cancer: Chronic myeloid leukemia bone marrow

Primary cancer 55
Samples
55
Cells
2,033,725
Curation
Curated
DEG
Caveat
Spatial
0/55
Open dataset
CosMx SMI / NanoString SMI Spatial transcriptomics Curated

LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI

Dataset key: HCC_41723121__CosMx_SMI

Liver 9

Disease detail: Primary cancer: Hepatocellular carcinoma

Primary cancer 9
Samples
9
Cells
1,446,124
Curation
Curated
DEG
NA
Spatial
0/9
Open dataset
CosMx SMI / NanoString SMI Spatial transcriptomics Curated

LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI

Dataset key: ICC_41723121__CosMx_SMI

Liver 6

Disease detail: Primary cancer: Intrahepatic cholangiocarcinoma

Primary cancer 6
Samples
6
Cells
901,465
Curation
Curated
DEG
NA
Spatial
0/6
Open dataset
Xenium Spatial transcriptomics Curated

Xenium Human Multi-Tissue and Cancer Panel showcase

Dataset key: XeniumMulti_10xGenomics__Xenium

Bone marrow 2/20 Heart 1/20 Kidney 3/20 Liver 2/20 Lung 2/20 Lymphoid tissue 3/20 Musculoskeletal 1/20 Ovary 1/20 Pancreas 3/20 Skin 2/20

Disease detail: Healthy/control: Healthy human, Primary cancer: Lung cancer, Non-cancer disease: Follicular lymphoid hyperplasia

Healthy/control 9/20 Primary cancer 9/20 Non-cancer disease 2/20
Samples
20
Cells
5,095,938
Curation
Curated
DEG
NA
Spatial
0/20
Open dataset
Atera Spatial transcriptomics Curated

10x Genomics Atera showcase

Dataset key: Atera_10xGenomics__Atera

Breast 1/2 Uterus/Cervix 1/2

Disease detail: Primary cancer: Breast cancer (ductal carcinoma in situ, HER2-1+)

Primary cancer 2
Samples
2
Cells
887,633
Curation
Curated
DEG
NA
Spatial
0/2
Open dataset
Visium HD Spatial transcriptomics Curated

10x Genomics Visium HD p2 TMA showcase

Dataset key: VisiumHD_p2_TMA__Visium_HD

Breast 36

Disease detail: Primary cancer: Breast cancer

Primary cancer 36
Samples
36
Cells
117,494
Curation
Curated
DEG
NA
Spatial
33/36
Open dataset
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Dataset key: B-NHL_38379051__PCF_CODEX

Lymphoid tissue 35

Disease detail: Primary cancer: B-cell non-Hodgkin lymphoma

Primary cancer 35
Samples
35
Cells
5,690,284
Curation
Curated
DEG
NA
Spatial
0/35
Open dataset