scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 18 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: MERFISH_500_Vizgen × 18 matches 18 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
MERFISH_500_Vizgen__MERFISH__MERFISHBreastCancerP1 MERFISH 500-plex Vizgen showcase Breast Primary cancer MERFISH 713,121 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHColonCancerP1 MERFISH 500-plex Vizgen showcase Large intestine Primary cancer MERFISH 677,451 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHColonCancerP2 MERFISH 500-plex Vizgen showcase Large intestine Primary cancer MERFISH 817,588 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP1 MERFISH 500-plex Vizgen showcase Liver Primary cancer MERFISH 568,355 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP2 MERFISH 500-plex Vizgen showcase Liver Primary cancer MERFISH 598,141 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP1 MERFISH 500-plex Vizgen showcase Lung Primary cancer MERFISH 353,762 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP2 MERFISH 500-plex Vizgen showcase Lung Primary cancer MERFISH 836,739 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP1 MERFISH 500-plex Vizgen showcase Skin Primary cancer MERFISH 468,138 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP2 MERFISH 500-plex Vizgen showcase Skin Primary cancer MERFISH 207,869 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP1 MERFISH 500-plex Vizgen showcase Ovary Primary cancer MERFISH 358,485 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice1 MERFISH 500-plex Vizgen showcase Ovary Primary cancer MERFISH 254,347 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice2 MERFISH 500-plex Vizgen showcase Ovary Primary cancer MERFISH 71,381 T1T2T3T1T2T3T1T2T3 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice3 MERFISH 500-plex Vizgen showcase Ovary Primary cancer MERFISH 212,425 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHProstateCancerP1 MERFISH 500-plex Vizgen showcase Prostate Primary cancer MERFISH 721,668 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHProstateCancerP2 MERFISH 500-plex Vizgen showcase Prostate Primary cancer MERFISH 993,825 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP1 MERFISH 500-plex Vizgen showcase Uterus/Cervix Primary cancer MERFISH 843,285 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP2_RACostain MERFISH 500-plex Vizgen showcase Uterus/Cervix Primary cancer MERFISH 741,749 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP2_ROCostain MERFISH 500-plex Vizgen showcase Uterus/Cervix Primary cancer MERFISH 758,506 Curated