scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
3 Samples
SearchFiltered
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 3 matches · sample view
Reset
Columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Search: VisiumHD_p2_WholeSlide × 3 matches 3 curated Download sample CSV
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_11mm_Human_Colon_Cancer_Fresh_Frozen

Dataset: 10x Genomics Visium HD p2 WholeSlide showcase

Organ: Large intestine

Disease detail: Colorectal cancer

Disease state: Primary cancer

Cells
1,302,549
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Colon_Cancer

Dataset: 10x Genomics Visium HD p2 WholeSlide showcase

Organ: Large intestine

Disease detail: Colorectal cancer

Disease state: Primary cancer

Cells
381,174
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Heart

Dataset: 10x Genomics Visium HD p2 WholeSlide showcase

Organ: Heart

Disease detail: Normal/healthy heart control

Disease state: Healthy/control

Cells
45,616
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.