scAtria single-cell spatial atlas resource

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Dataset Sample
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9 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: Xenium5k_10xGenomics × 9 matches 9 curated Download sample CSV
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Breast

Disease detail: Breast cancer

Disease state: Primary cancer

Cells
699,110
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Cervical_Cancer_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Uterus/Cervix

Disease detail: Cervical Cancer

Disease state: Primary cancer

Cells
840,387
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Lung

Disease detail: Lung cancer (invasive acinar adenocarcinoma)

Disease state: Primary cancer

Cells
278,328
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lymph_Node_Reactive_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Lymphoid tissue

Disease detail: Reactive lymph node

Disease state: Non-cancer disease

Cells
708,983
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Ovary

Disease detail: Ovarian cancer (papillary serous carcinoma)

Disease state: Primary cancer

Cells
200,900
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_FF

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Ovary

Disease detail: Ovarian cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
1,157,659
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Prostate

Disease detail: Prostate cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
193,000
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Skin

Disease detail: Melanoma

Disease state: Primary cancer

Cells
112,551
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Ovarian_Cancer_FFPE_XRrun

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Ovary

Disease detail: Ovarian cancer (papillary serous carcinoma)

Disease state: Primary cancer

Cells
407,124
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.