scAtria single-cell spatial atlas resource

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4 Datasets
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: XeniumBreast_10xGenomics × 4 matches 4 curated
Xenium Spatial transcriptomics Curated

Xenium Human Breast Gene Expression Panel 10x Genomics showcase

Dataset key: XeniumBreast_10xGenomics__Xenium

Breast 6

Disease detail: Primary cancer: Breast cancer (invasive ductal carcinoma)

Primary cancer 6
Samples
6
Cells
3,652,654
Curation
Curated
DEG
NA
Spatial
0/6
Open dataset
Xenium Spatial transcriptomics Curated

Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase

Dataset key: XeniumBreastJanesick_10xGenomics__Xenium

Breast 12

Disease detail: Primary cancer: Breast cancer (DCIS, ER+/PR+/HER2-2+), Healthy/control: Healthy human

Primary cancer 11/12 Healthy/control 1/12
Samples
12
Cells
3,442,976
Curation
Curated
DEG
NA
Spatial
0/12
Open dataset
Xenium Spatial transcriptomics Curated

Xenium Human Multi-Tissue and Cancer Panel showcase

Dataset key: XeniumMulti_10xGenomics__Xenium

Bone marrow 2/20 Heart 1/20 Kidney 3/20 Liver 2/20 Lung 2/20 Lymphoid tissue 3/20 Musculoskeletal 1/20 Ovary 1/20 Pancreas 3/20 Skin 2/20

Disease detail: Healthy/control: Healthy human, Primary cancer: Lung cancer, Non-cancer disease: Follicular lymphoid hyperplasia

Healthy/control 9/20 Primary cancer 9/20 Non-cancer disease 2/20
Samples
20
Cells
5,095,938
Curation
Curated
DEG
NA
Spatial
0/20
Open dataset