scAtria single-cell spatial atlas resource

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? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
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3 Datasets
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: cHL_41923627 × 3 matches 3 curated
Dataset Organs ?For mixed datasets, fractions show sample counts per organ. Disease state Technique Samples Cells Spatial module Curation
cHL_41923627 · CosMx SMI / NanoString SMI
cHL_41923627__CosMx_SMI
Lymphoid tissue 43
Primary cancer 43
CosMx 43 266,199
43/43
 Curated
cHL_41923627 · PCF / CODEX / PhenoCycler Fusion
cHL_41923627__PCF_CODEX
Lymphoid tissue 27
Primary cancer 27
CODEX 27 934,478
27/27
 Curated
cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging
cHL_41923627__MIBI_TOF
Lymphoid tissue 9
Primary cancer 9
MIBI 9 1,409,210
1/9
 Curated