scAtria single-cell spatial atlas resource

BRCA_35122013 · IMC / Imaging Mass Cytometry

BRCA_35122013 · BRCA_35122013__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

51-100 of 548
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

547 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
BRCA_35122013__IMC__MB-0132__core1__image533 Breast 1,115 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0133__core1__image466 Breast 44 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0134__core1__image38 Breast 1,092 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0134__core1__image396 Breast 548 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0135__core1__image320 Breast 1,486 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0136__core1__image201 Breast 1,648 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0137__core1__image528 Breast 1,808 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0138__core1__image80 Breast 252 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0138__core2__image119 Breast 509 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0139__core1__image30 Breast 476 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0140__core1__image186 Breast 1,740 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0141__core1__image116 Breast 216 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0142__core1__image77 Breast 744 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0143__core1__image26 Breast 1,313 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0144__core1__image461 Breast 309 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0144__core1__image552 Breast 591 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0145__core1__image435 Breast 982 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0150__core1__image155 Breast 1,203 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0151__core1__image520 Breast 1,150 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0152__core1__image452 Breast 126 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0153__core1__image389 Breast 963 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0154__core1__image539 Breast 228 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0154__core1__image543 Breast 338 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0158__core1__image303 Breast 459 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0161__core1__image122 Breast 1,003 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0162__core1__image515 Breast 85 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0163__core1__image445 Breast 1,437 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0164__core1__image374 Breast 417 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0165__core1__image115 Breast 685 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0165__core2__image512 Breast 477 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0166__core1__image298 Breast 517 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0167__core1__image84 Breast 1,666 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0168__core1__image78 Breast 819 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0169__core1__image72 Breast 345 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0170__core1__image131 Breast 1,153 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0173__core1__image45 Breast 183 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0174__core1__image33 Breast 954 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0175__core1__image23 Breast 1,002 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0176__core1__image67 Breast 1,175 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0177__core1__image52 Breast 630 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0178__core1__image34 Breast 1,163 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0179__core1__image549 Breast 1,569 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0180__core1__image59 Breast 1,247 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0181__core1__image49 Breast 1,293 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0182__core1__image28 Breast 1,671 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0183__core1__image15 Breast 332 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0184__core1__image54 Breast 1,714 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0184__core2__image544 Breast 225 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0184__core3__image553 Breast 1,499 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0185__core1__image517 Breast 956 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

547 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
BRCA_35122013__IMC__MB-0132__core1__image533 Breast 1,115 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0133__core1__image466 Breast 44 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0134__core1__image38 Breast 1,092 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0134__core1__image396 Breast 548 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0135__core1__image320 Breast 1,486 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0136__core1__image201 Breast 1,648 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0137__core1__image528 Breast 1,808 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0138__core1__image80 Breast 252 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0138__core2__image119 Breast 509 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0139__core1__image30 Breast 476 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0140__core1__image186 Breast 1,740 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0141__core1__image116 Breast 216 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0142__core1__image77 Breast 744 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0143__core1__image26 Breast 1,313 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0144__core1__image461 Breast 309 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0144__core1__image552 Breast 591 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0145__core1__image435 Breast 982 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0150__core1__image155 Breast 1,203 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0151__core1__image520 Breast 1,150 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0152__core1__image452 Breast 126 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0153__core1__image389 Breast 963 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0154__core1__image539 Breast 228 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0154__core1__image543 Breast 338 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0158__core1__image303 Breast 459 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0161__core1__image122 Breast 1,003 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0162__core1__image515 Breast 85 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0163__core1__image445 Breast 1,437 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0164__core1__image374 Breast 417 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0165__core1__image115 Breast 685 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0165__core2__image512 Breast 477 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0166__core1__image298 Breast 517 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0167__core1__image84 Breast 1,666 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0168__core1__image78 Breast 819 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0169__core1__image72 Breast 345 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0170__core1__image131 Breast 1,153 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0173__core1__image45 Breast 183 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0174__core1__image33 Breast 954 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0175__core1__image23 Breast 1,002 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0176__core1__image67 Breast 1,175 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0177__core1__image52 Breast 630 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0178__core1__image34 Breast 1,163 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0179__core1__image549 Breast 1,569 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0180__core1__image59 Breast 1,247 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0181__core1__image49 Breast 1,293 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0182__core1__image28 Breast 1,671 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0183__core1__image15 Breast 332 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0184__core1__image54 Breast 1,714 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0184__core2__image544 Breast 225 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0184__core3__image553 Breast 1,499 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0185__core1__image517 Breast 956 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

547 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
BRCA_35122013__IMC__MB-0132__core1__image533 Breast 1,115 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0133__core1__image466 Breast 44 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0134__core1__image38 Breast 1,092 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0134__core1__image396 Breast 548 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0135__core1__image320 Breast 1,486 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0136__core1__image201 Breast 1,648 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0137__core1__image528 Breast 1,808 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0138__core1__image80 Breast 252 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0138__core2__image119 Breast 509 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0139__core1__image30 Breast 476 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0140__core1__image186 Breast 1,740 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0141__core1__image116 Breast 216 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0142__core1__image77 Breast 744 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0143__core1__image26 Breast 1,313 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0144__core1__image461 Breast 309 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0144__core1__image552 Breast 591 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0145__core1__image435 Breast 982 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0150__core1__image155 Breast 1,203 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0151__core1__image520 Breast 1,150 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0152__core1__image452 Breast 126 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0153__core1__image389 Breast 963 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0154__core1__image539 Breast 228 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0154__core1__image543 Breast 338 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0158__core1__image303 Breast 459 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0161__core1__image122 Breast 1,003 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0162__core1__image515 Breast 85 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0163__core1__image445 Breast 1,437 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0164__core1__image374 Breast 417 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0165__core1__image115 Breast 685 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0165__core2__image512 Breast 477 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0166__core1__image298 Breast 517 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0167__core1__image84 Breast 1,666 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0168__core1__image78 Breast 819 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0169__core1__image72 Breast 345 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0170__core1__image131 Breast 1,153 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0173__core1__image45 Breast 183 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0174__core1__image33 Breast 954 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0175__core1__image23 Breast 1,002 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0176__core1__image67 Breast 1,175 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0177__core1__image52 Breast 630 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0178__core1__image34 Breast 1,163 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0179__core1__image549 Breast 1,569 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0180__core1__image59 Breast 1,247 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0181__core1__image49 Breast 1,293 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0182__core1__image28 Breast 1,671 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0183__core1__image15 Breast 332 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0184__core1__image54 Breast 1,714 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0184__core2__image544 Breast 225 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0184__core3__image553 Breast 1,499 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0185__core1__image517 Breast 956 Ready T1T2T3 View
Manifest Topology summary