scAtria single-cell spatial atlas resource

BRCA_35122013 · IMC / Imaging Mass Cytometry

BRCA_35122013 · BRCA_35122013__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

401-450 of 548
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

547 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
BRCA_35122013__IMC__MB-0529__core1__image399 Breast 727 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0530__core1__image348 Breast 1,134 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0531__core1__image441 Breast 607 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0532__core1__image125 Breast 1,109 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0536__core1__image284 Breast 1,023 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0537__core1__image488 Breast 1,110 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0538__core1__image121 Breast 654 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0538__core2__image150 Breast 1,384 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0542__core1__image160 Breast 1,599 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0543__core1__image522 Breast 862 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0544__core1__image168 Breast 1,489 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0545__core1__image356 Breast 798 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0547__core1__image46 Breast 267 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0547__core1__image486 Breast 380 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0548__core1__image18 Breast 633 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0549__core1__image188 Breast 729 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0549__core2__image547 Breast 560 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0552__core1__image8 Breast 1,072 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0553__core1__image508 Breast 745 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0554__core1__image290 Breast 138 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0555__core1__image41 Breast 172 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0555__core1__image64 Breast 230 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0556__core1__image377 Breast 517 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0557__core1__image299 Breast 880 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0558__core1__image365 Breast 67 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0559__core1__image159 Breast 390 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0559__core1__image174 Breast 63 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0562__core1__image180 Breast 1,266 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0563__core1__image9 Breast 1,247 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0565__core1__image373 Breast 1,231 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0568__core1__image204 Breast 1,181 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0569__core1__image248 Breast 926 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0570__core1__image465 Breast 1,544 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0571__core1__image434 Breast 681 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0573__core1__image352 Breast 670 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0574__core1__image199 Breast 1,375 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0575__core1__image191 Breast 1,812 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0576__core1__image177 Breast 1,308 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0577__core1__image100 Breast 282 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0578__core1__image161 Breast 1,604 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0579__core1__image198 Breast 1,787 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0580__core1__image190 Breast 1,632 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0581__core1__image175 Breast 1,658 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0582__core1__image154 Breast 1,791 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0583__core1__image133 Breast 274 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0583__core1__image134 Breast 686 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0583__core2__image207 Breast 1,158 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0584__core1__image22 Breast 1,078 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0585__core1__image110 Breast 650 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0586__core1__image444 Breast 856 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

547 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
BRCA_35122013__IMC__MB-0529__core1__image399 Breast 727 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0530__core1__image348 Breast 1,134 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0531__core1__image441 Breast 607 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0532__core1__image125 Breast 1,109 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0536__core1__image284 Breast 1,023 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0537__core1__image488 Breast 1,110 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0538__core1__image121 Breast 654 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0538__core2__image150 Breast 1,384 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0542__core1__image160 Breast 1,599 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0543__core1__image522 Breast 862 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0544__core1__image168 Breast 1,489 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0545__core1__image356 Breast 798 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0547__core1__image46 Breast 267 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0547__core1__image486 Breast 380 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0548__core1__image18 Breast 633 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0549__core1__image188 Breast 729 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0549__core2__image547 Breast 560 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0552__core1__image8 Breast 1,072 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0553__core1__image508 Breast 745 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0554__core1__image290 Breast 138 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0555__core1__image41 Breast 172 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0555__core1__image64 Breast 230 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0556__core1__image377 Breast 517 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0557__core1__image299 Breast 880 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0558__core1__image365 Breast 67 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0559__core1__image159 Breast 390 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0559__core1__image174 Breast 63 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0562__core1__image180 Breast 1,266 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0563__core1__image9 Breast 1,247 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0565__core1__image373 Breast 1,231 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0568__core1__image204 Breast 1,181 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0569__core1__image248 Breast 926 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0570__core1__image465 Breast 1,544 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0571__core1__image434 Breast 681 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0573__core1__image352 Breast 670 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0574__core1__image199 Breast 1,375 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0575__core1__image191 Breast 1,812 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0576__core1__image177 Breast 1,308 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0577__core1__image100 Breast 282 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0578__core1__image161 Breast 1,604 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0579__core1__image198 Breast 1,787 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0580__core1__image190 Breast 1,632 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0581__core1__image175 Breast 1,658 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0582__core1__image154 Breast 1,791 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0583__core1__image133 Breast 274 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0583__core1__image134 Breast 686 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0583__core2__image207 Breast 1,158 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0584__core1__image22 Breast 1,078 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0585__core1__image110 Breast 650 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0586__core1__image444 Breast 856 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

547 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
BRCA_35122013__IMC__MB-0529__core1__image399 Breast 727 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0530__core1__image348 Breast 1,134 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0531__core1__image441 Breast 607 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0532__core1__image125 Breast 1,109 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0536__core1__image284 Breast 1,023 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0537__core1__image488 Breast 1,110 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0538__core1__image121 Breast 654 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0538__core2__image150 Breast 1,384 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0542__core1__image160 Breast 1,599 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0543__core1__image522 Breast 862 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0544__core1__image168 Breast 1,489 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0545__core1__image356 Breast 798 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0547__core1__image46 Breast 267 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0547__core1__image486 Breast 380 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0548__core1__image18 Breast 633 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0549__core1__image188 Breast 729 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0549__core2__image547 Breast 560 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0552__core1__image8 Breast 1,072 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0553__core1__image508 Breast 745 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0554__core1__image290 Breast 138 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0555__core1__image41 Breast 172 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0555__core1__image64 Breast 230 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0556__core1__image377 Breast 517 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0557__core1__image299 Breast 880 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0558__core1__image365 Breast 67 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0559__core1__image159 Breast 390 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0559__core1__image174 Breast 63 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0562__core1__image180 Breast 1,266 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0563__core1__image9 Breast 1,247 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0565__core1__image373 Breast 1,231 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0568__core1__image204 Breast 1,181 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0569__core1__image248 Breast 926 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0570__core1__image465 Breast 1,544 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0571__core1__image434 Breast 681 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0573__core1__image352 Breast 670 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0574__core1__image199 Breast 1,375 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0575__core1__image191 Breast 1,812 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0576__core1__image177 Breast 1,308 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0577__core1__image100 Breast 282 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0578__core1__image161 Breast 1,604 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0579__core1__image198 Breast 1,787 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0580__core1__image190 Breast 1,632 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0581__core1__image175 Breast 1,658 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0582__core1__image154 Breast 1,791 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0583__core1__image133 Breast 274 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0583__core1__image134 Breast 686 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0583__core2__image207 Breast 1,158 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0584__core1__image22 Breast 1,078 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0585__core1__image110 Breast 650 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0586__core1__image444 Breast 856 Ready T1T2T3 View
Manifest Topology summary