Features
Cell-ontology markers
Features tested
39
Label tier
cell_type_tier_3
Marker output
35 rows
QC
Protein panel
Seurat FindAllMarkers, one curated cell-ontology label versus all others. Effect size is logFC; significance is BH FDR.
| Cell ontology | Feature | logFC | FDR | p value |
|---|---|---|---|---|
| Tumor/Malignant cell | panck | Inf | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | epcam | Inf | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | h3k27me3 | 794.556 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | caix | 765.819 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | pr | 396.063 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | pmtor | 345.169 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | fibronectin | 241.645 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | twist | 228.244 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | cd20 | 214.502 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | ck7 | 211.717 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | ck5 | 153.370 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | ki67 | 140.881 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | ps6 | 73.309 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | sox9 | 64.434 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | her2 | 45.073 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | ck19 | 44.701 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | cd44 | 30.093 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | egfr | 22.066 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | cd45 | 17.359 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | slug | 11.251 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | p53 | 7.811 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | ck14 | 5.228 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | sma | 2.116 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | dna1 | 36.600 | 1.39e-123 | 1.34e-123 |
| Tumor/Malignant cell | dna2 | 68.647 | 2.46e-112 | 2.46e-112 |
| Myoepithelial cell | cd68 | 27.093 | 0.00e+0 | 0.00e+0 |
| Myoepithelial cell | vimentin | 10.131 | 0.00e+0 | 0.00e+0 |
| Myoepithelial cell | sma | 3.870 | 0.00e+0 | 0.00e+0 |
| Myoepithelial cell | ck14 | 0.757 | 0.00e+0 | 0.00e+0 |
| Myoepithelial cell | cd3 | 0.447 | 0.00e+0 | 0.00e+0 |
| Myoepithelial cell | er | 16.692 | 1.13e-12 | 1.13e-12 |
| T cell | cd3 | 3.157 | 0.00e+0 | 0.00e+0 |
| Macrophage | cd3 | 1.577 | 0.00e+0 | 0.00e+0 |
| Macrophage | vimentin | 1.130 | 0.00e+0 | 0.00e+0 |
| B cell | cd3 | 1.415 | 0.00e+0 | 0.00e+0 |