scAtria single-cell spatial atlas resource

BRCA_35122013 · IMC / Imaging Mass Cytometry

BRCA_35122013 · BRCA_35122013__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-50 of 548
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

547 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
BRCA_35122013__IMC__MB-0000__core1__image527 Breast 256 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0002__core1__image345 Breast 1,111 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0005__core1__image211 Breast 1,088 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0010__core1__image420 Breast 1,077 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0013__core1__image371 Breast 2,062 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0014__core1__image326 Breast 1,569 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0018__core1__image128 Breast 1,057 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0018__core1__image218 Breast 349 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0020__core1__image88 Breast 175 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0022__core1__image456 Breast 613 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0028__core1__image413 Breast 1,088 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0030__core1__image364 Breast 875 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0035__core1__image138 Breast 909 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0040__core1__image165 Breast 1,595 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0045__core1__image185 Breast 1,304 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0050__core1__image48 Breast 1,081 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0060__core1__image37 Breast 2,164 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0064__core1__image152 Breast 1,284 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0064__core1__image153 Breast 502 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0075__core1__image145 Breast 892 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0077__core1__image81 Breast 755 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0077__core2__image136 Breast 915 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0081__core1__image44 Breast 1,698 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0081__core2__image460 Breast 1,253 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0087__core1__image279 Breast 329 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0087__core1__image450 Breast 186 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0095__core1__image27 Breast 1,380 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0099__core1__image503 Breast 969 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0105__core1__image523 Breast 1,194 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0107__core1__image350 Breast 1,080 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0109__core1__image487 Breast 1,741 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0111__core1__image451 Breast 1,165 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0112__core1__image407 Breast 481 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0114__core1__image482 Breast 765 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0115__core1__image428 Breast 1,150 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0116__core1__image483 Breast 1,629 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0117__core1__image436 Breast 1,461 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0118__core1__image524 Breast 1,744 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0119__core1__image97 Breast 1,645 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0120__core1__image462 Breast 592 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0120__core1__image495 Breast 182 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0121__core1__image470 Breast 805 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0122__core1__image442 Breast 950 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0123__core1__image401 Breast 1,378 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0124__core1__image270 Breast 1,060 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0126__core1__image314 Breast 1,219 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0127__core1__image357 Breast 275 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0128__core1__image71 Breast 1,005 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0130__core1__image297 Breast 870 Ready T1T2T3 View
Manifest Domain summary
BRCA_35122013__IMC__MB-0131__core1__image43 Breast 1,668 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

547 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
BRCA_35122013__IMC__MB-0000__core1__image527 Breast 256 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0002__core1__image345 Breast 1,111 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0005__core1__image211 Breast 1,088 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0010__core1__image420 Breast 1,077 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0013__core1__image371 Breast 2,062 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0014__core1__image326 Breast 1,569 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0018__core1__image128 Breast 1,057 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0018__core1__image218 Breast 349 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0020__core1__image88 Breast 175 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0022__core1__image456 Breast 613 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0028__core1__image413 Breast 1,088 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0030__core1__image364 Breast 875 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0035__core1__image138 Breast 909 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0040__core1__image165 Breast 1,595 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0045__core1__image185 Breast 1,304 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0050__core1__image48 Breast 1,081 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0060__core1__image37 Breast 2,164 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0064__core1__image152 Breast 1,284 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0064__core1__image153 Breast 502 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0075__core1__image145 Breast 892 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0077__core1__image81 Breast 755 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0077__core2__image136 Breast 915 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0081__core1__image44 Breast 1,698 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0081__core2__image460 Breast 1,253 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0087__core1__image279 Breast 329 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0087__core1__image450 Breast 186 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0095__core1__image27 Breast 1,380 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0099__core1__image503 Breast 969 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0105__core1__image523 Breast 1,194 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0107__core1__image350 Breast 1,080 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0109__core1__image487 Breast 1,741 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0111__core1__image451 Breast 1,165 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0112__core1__image407 Breast 481 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0114__core1__image482 Breast 765 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0115__core1__image428 Breast 1,150 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0116__core1__image483 Breast 1,629 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0117__core1__image436 Breast 1,461 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0118__core1__image524 Breast 1,744 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0119__core1__image97 Breast 1,645 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0120__core1__image462 Breast 592 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0120__core1__image495 Breast 182 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0121__core1__image470 Breast 805 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0122__core1__image442 Breast 950 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0123__core1__image401 Breast 1,378 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0124__core1__image270 Breast 1,060 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0126__core1__image314 Breast 1,219 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0127__core1__image357 Breast 275 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0128__core1__image71 Breast 1,005 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0130__core1__image297 Breast 870 Ready T1T2T3 View
Manifest Pair summary
BRCA_35122013__IMC__MB-0131__core1__image43 Breast 1,668 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

547 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
BRCA_35122013__IMC__MB-0000__core1__image527 Breast 256 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0002__core1__image345 Breast 1,111 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0005__core1__image211 Breast 1,088 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0010__core1__image420 Breast 1,077 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0013__core1__image371 Breast 2,062 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0014__core1__image326 Breast 1,569 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0018__core1__image128 Breast 1,057 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0018__core1__image218 Breast 349 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0020__core1__image88 Breast 175 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0022__core1__image456 Breast 613 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0028__core1__image413 Breast 1,088 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0030__core1__image364 Breast 875 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0035__core1__image138 Breast 909 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0040__core1__image165 Breast 1,595 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0045__core1__image185 Breast 1,304 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0050__core1__image48 Breast 1,081 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0060__core1__image37 Breast 2,164 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0064__core1__image152 Breast 1,284 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0064__core1__image153 Breast 502 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0075__core1__image145 Breast 892 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0077__core1__image81 Breast 755 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0077__core2__image136 Breast 915 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0081__core1__image44 Breast 1,698 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0081__core2__image460 Breast 1,253 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0087__core1__image279 Breast 329 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0087__core1__image450 Breast 186 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0095__core1__image27 Breast 1,380 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0099__core1__image503 Breast 969 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0105__core1__image523 Breast 1,194 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0107__core1__image350 Breast 1,080 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0109__core1__image487 Breast 1,741 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0111__core1__image451 Breast 1,165 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0112__core1__image407 Breast 481 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0114__core1__image482 Breast 765 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0115__core1__image428 Breast 1,150 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0116__core1__image483 Breast 1,629 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0117__core1__image436 Breast 1,461 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0118__core1__image524 Breast 1,744 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0119__core1__image97 Breast 1,645 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0120__core1__image462 Breast 592 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0120__core1__image495 Breast 182 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0121__core1__image470 Breast 805 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0122__core1__image442 Breast 950 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0123__core1__image401 Breast 1,378 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0124__core1__image270 Breast 1,060 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0126__core1__image314 Breast 1,219 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0127__core1__image357 Breast 275 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0128__core1__image71 Breast 1,005 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0130__core1__image297 Breast 870 Ready T1T2T3 View
Manifest Topology summary
BRCA_35122013__IMC__MB-0131__core1__image43 Breast 1,668 Ready T1T2T3 View
Manifest Topology summary