scAtria single-cell spatial atlas resource

CML_41592325 · PCF / CODEX / PhenoCycler Fusion

CML_41592325 · CML_41592325__PCF_CODEX

PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated Tiered
Features

Cell-ontology markers

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Features tested
52
Label tier
cell_type_tier_3
Marker output
211 rows
QC
Protein panel
Seurat FindAllMarkers, one curated cell-ontology label versus all others. Effect size is logFC; significance is BH FDR.
Cell ontology Feature logFC FDR p value
T cell cd5 7.338 0.00e+0 0.00e+0
T cell cd3 5.055 0.00e+0 0.00e+0
T cell cd8a 4.875 0.00e+0 0.00e+0
T cell cd27 4.328 0.00e+0 0.00e+0
T cell cd90 3.697 0.00e+0 0.00e+0
T cell cd4 3.179 0.00e+0 0.00e+0
T cell cd45 2.792 0.00e+0 0.00e+0
T cell pd1 2.217 0.00e+0 0.00e+0
Stromal cell, unspecified podoplanin 7.055 0.00e+0 0.00e+0
Stromal cell, unspecified ng2 5.266 0.00e+0 0.00e+0
Stromal cell, unspecified opn 2.447 0.00e+0 0.00e+0
Stromal cell, unspecified cd61 1.554 0.00e+0 0.00e+0
Stromal cell, unspecified pd1 0.534 4.67e-134 3.89e-134
Stromal cell, unspecified cd86 0.388 3.73e-61 3.73e-61
Bone cell cd61 6.469 0.00e+0 0.00e+0
Bone cell opn 4.634 0.00e+0 0.00e+0
Bone cell ng2 3.727 0.00e+0 0.00e+0
Bone cell podoplanin 2.475 0.00e+0 0.00e+0
Bone cell emcn 1.690 0.00e+0 0.00e+0
Bone cell cd127 1.411 0.00e+0 0.00e+0
Bone cell nkp46 1.344 0.00e+0 0.00e+0
Bone cell cd105 1.315 0.00e+0 0.00e+0
Bone cell cd86 1.224 0.00e+0 0.00e+0
Bone cell cd135 0.805 0.00e+0 0.00e+0
Bone cell perilipin 0.647 0.00e+0 0.00e+0
Bone cell ki67 0.639 0.00e+0 0.00e+0
Bone cell gfp 0.482 0.00e+0 0.00e+0
Bone cell cd5 0.464 0.00e+0 0.00e+0
Bone cell cd11c 0.416 0.00e+0 0.00e+0
Bone cell cd3 0.345 0.00e+0 0.00e+0
ILC lineage cell nkp46 5.959 0.00e+0 0.00e+0
ILC lineage cell cd27 4.789 0.00e+0 0.00e+0
ILC lineage cell cd45 4.761 0.00e+0 0.00e+0
ILC lineage cell cd90 3.465 0.00e+0 0.00e+0
ILC lineage cell pdl1 0.814 8.36e-85 5.97e-85
ILC lineage cell cd48 0.592 2.61e-78 2.24e-78
ILC lineage cell cd11c 0.770 2.32e-32 2.32e-32
B cell b220 5.852 0.00e+0 0.00e+0
B cell cd38 3.313 0.00e+0 0.00e+0
B cell mhcii 1.668 0.00e+0 0.00e+0
B cell cd45 1.414 0.00e+0 0.00e+0
B cell cd47 1.359 0.00e+0 0.00e+0
B cell emcn 1.087 0.00e+0 0.00e+0
B cell perilipin 0.686 0.00e+0 0.00e+0
B cell cd31 0.623 0.00e+0 0.00e+0
B cell cd4 1.687 1.38e-230 1.13e-230
B cell pd1 0.608 5.56e-97 5.05e-97
B cell cd41 0.375 3.12e-2 3.12e-2
Granulocyte ly6g 5.544 0.00e+0 0.00e+0
Granulocyte icos 4.363 0.00e+0 0.00e+0
Granulocyte sirpa 4.207 0.00e+0 0.00e+0
Granulocyte cd127 2.866 0.00e+0 0.00e+0
Granulocyte cd11b 2.151 0.00e+0 0.00e+0
Granulocyte cd45 1.771 0.00e+0 0.00e+0
Granulocyte ng2 1.708 0.00e+0 0.00e+0
Granulocyte nkp46 1.210 0.00e+0 0.00e+0
Granulocyte cd34 1.098 0.00e+0 0.00e+0
Granulocyte cd105 1.069 0.00e+0 0.00e+0
Granulocyte cd135 0.905 0.00e+0 0.00e+0
Granulocyte cd61 0.776 0.00e+0 0.00e+0
Granulocyte cd3 0.717 0.00e+0 0.00e+0
Granulocyte cd169 0.687 0.00e+0 0.00e+0
Granulocyte perilipin 0.540 0.00e+0 0.00e+0
Granulocyte ki67 0.265 0.00e+0 0.00e+0
Granulocyte cd11c 1.056 9.00e-119 9.00e-119
Pericyte/Smooth muscle lepr 5.535 0.00e+0 0.00e+0
Pericyte/Smooth muscle pd1 1.547 0.00e+0 0.00e+0
Pericyte/Smooth muscle tie2 1.465 0.00e+0 0.00e+0
Pericyte/Smooth muscle podoplanin 0.803 0.00e+0 0.00e+0
Pericyte/Smooth muscle esam 0.780 0.00e+0 0.00e+0
Pericyte/Smooth muscle cd31 0.779 0.00e+0 0.00e+0
Pericyte/Smooth muscle cd38 0.451 0.00e+0 0.00e+0
Pericyte/Smooth muscle cd90 0.896 7.01e-206 5.60e-206
Pericyte/Smooth muscle ng2 1.279 3.61e-56 3.25e-56
Pericyte/Smooth muscle cd11c 0.530 7.13e-52 7.13e-52
Plasma cell igm 5.344 0.00e+0 0.00e+0
Plasma cell b220 2.847 0.00e+0 0.00e+0
Plasma cell cd3 1.932 0.00e+0 0.00e+0
Plasma cell emcn 1.723 0.00e+0 0.00e+0
Plasma cell cd38 1.545 0.00e+0 0.00e+0
Plasma cell mhcii 1.188 0.00e+0 0.00e+0
Plasma cell cd45 1.113 0.00e+0 0.00e+0
Plasma cell cd31 0.360 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell ly6c 4.678 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell cd48 3.179 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell cd117 3.154 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell cd27 2.538 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell cd34 2.014 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell perilipin 1.970 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell cd135 1.286 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell cd86 0.765 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell lepr 0.535 0.00e+0 0.00e+0
Hematopoietic stem/progenitor cell cd169 0.471 7.03e-36 6.39e-36
Hematopoietic stem/progenitor cell cd106 0.978 4.09e-29 4.09e-29
Endothelial cell cd31 4.322 0.00e+0 0.00e+0
Endothelial cell cd34 3.533 0.00e+0 0.00e+0
Endothelial cell emcn 2.435 0.00e+0 0.00e+0
Endothelial cell cd38 2.388 0.00e+0 0.00e+0
Endothelial cell esam 1.875 0.00e+0 0.00e+0
Endothelial cell lepr 1.498 0.00e+0 0.00e+0
Endothelial cell cd41 1.273 0.00e+0 0.00e+0
Endothelial cell tie2 1.232 0.00e+0 0.00e+0
Endothelial cell perilipin 0.365 0.00e+0 0.00e+0
Immune cell, unspecified pdl1 4.039 0.00e+0 0.00e+0
Immune cell, unspecified cd45 3.390 0.00e+0 0.00e+0
Immune cell, unspecified cd90 3.334 0.00e+0 0.00e+0
Immune cell, unspecified cd27 3.027 0.00e+0 0.00e+0
Immune cell, unspecified sirpa 2.720 0.00e+0 0.00e+0
Immune cell, unspecified cd48 1.515 0.00e+0 0.00e+0
Immune cell, unspecified cd31 0.318 0.00e+0 0.00e+0
Immune cell, unspecified mhcii 0.753 3.66e-188 2.44e-188
Immune cell, unspecified cd3 1.790 7.50e-180 5.62e-180
Immune cell, unspecified cd11c 1.784 7.73e-137 6.44e-137
Immune cell, unspecified cd5 1.586 1.62e-64 1.49e-64
Immune cell, unspecified cd8a 1.199 1.43e-21 1.43e-21
Other cd135 3.873 0.00e+0 0.00e+0
Other nkp46 3.804 0.00e+0 0.00e+0
Other cd11c 3.392 0.00e+0 0.00e+0
Other ng2 3.154 0.00e+0 0.00e+0
Other cd3 3.073 0.00e+0 0.00e+0
Other cd105 2.997 0.00e+0 0.00e+0
Other icos 2.565 0.00e+0 0.00e+0
Other ki67 2.527 0.00e+0 0.00e+0
Other cd27 2.098 0.00e+0 0.00e+0
Other cd86 1.959 0.00e+0 0.00e+0
Other cd34 1.801 0.00e+0 0.00e+0
Other emcn 1.601 0.00e+0 0.00e+0
Other pdl1 1.562 0.00e+0 0.00e+0
Other cd127 1.430 0.00e+0 0.00e+0
Other cd5 1.245 0.00e+0 0.00e+0
Other pd1 1.088 0.00e+0 0.00e+0
Other perilipin 1.079 0.00e+0 0.00e+0
Other podoplanin 0.932 0.00e+0 0.00e+0
Other cd117 0.848 0.00e+0 0.00e+0
Other cd169 0.590 0.00e+0 0.00e+0
Other cd8a 0.563 0.00e+0 0.00e+0
Other cd41 0.268 0.00e+0 0.00e+0
Other tie2 0.825 5.66e-56 5.42e-56
Other cd90 0.590 8.69e-54 8.69e-54
Dendritic cell mhcii 3.592 0.00e+0 0.00e+0
Dendritic cell pdl1 3.300 0.00e+0 0.00e+0
Dendritic cell cd48 2.007 0.00e+0 0.00e+0
Dendritic cell cd11c 1.825 0.00e+0 0.00e+0
Dendritic cell cd45 1.761 0.00e+0 0.00e+0
Dendritic cell cd31 1.703 0.00e+0 0.00e+0
Dendritic cell sirpa 1.554 0.00e+0 0.00e+0
Dendritic cell cd4 1.423 0.00e+0 0.00e+0
Dendritic cell cd106 0.615 0.00e+0 0.00e+0
Dendritic cell igm 0.292 0.00e+0 0.00e+0
Dendritic cell cd90 0.357 5.37e-176 5.37e-176
Erythroid progenitor cell cd86 3.531 0.00e+0 0.00e+0
Erythroid progenitor cell cd49d 2.882 0.00e+0 0.00e+0
Erythroid progenitor cell emcn 2.509 0.00e+0 0.00e+0
Erythroid progenitor cell nkp46 2.269 0.00e+0 0.00e+0
Erythroid progenitor cell cd71 1.833 0.00e+0 0.00e+0
Erythroid progenitor cell cd106 1.536 0.00e+0 0.00e+0
Erythroid progenitor cell cd105 1.423 0.00e+0 0.00e+0
Erythroid progenitor cell ki67 1.197 0.00e+0 0.00e+0
Erythroid progenitor cell opn 1.072 0.00e+0 0.00e+0
Erythroid progenitor cell cd127 0.656 0.00e+0 0.00e+0
Erythroid progenitor cell pdl1 0.617 0.00e+0 0.00e+0
Erythroid progenitor cell gfp 0.609 0.00e+0 0.00e+0
Erythroid progenitor cell cd5 0.548 0.00e+0 0.00e+0
Erythroid progenitor cell cd3 0.469 0.00e+0 0.00e+0
Erythroid progenitor cell cd11c 0.317 0.00e+0 0.00e+0
Erythroid progenitor cell cd41 0.368 4.64e-300 4.37e-300
Erythroid progenitor cell cd47 0.632 8.28e-298 8.28e-298
Erythroid cell cd71 3.470 0.00e+0 0.00e+0
Erythroid cell cd49d 2.121 0.00e+0 0.00e+0
Erythroid cell cd150 1.524 0.00e+0 0.00e+0
Erythroid cell esam 1.416 0.00e+0 0.00e+0
Erythroid cell tie2 1.362 0.00e+0 0.00e+0
Erythroid cell gfp 0.888 0.00e+0 0.00e+0
Erythroid cell podoplanin 0.809 0.00e+0 0.00e+0
Erythroid cell pd1 0.767 0.00e+0 0.00e+0
Erythroid cell cd47 0.756 0.00e+0 0.00e+0
Erythroid cell ki67 0.712 0.00e+0 0.00e+0
Erythroid cell cd106 0.664 0.00e+0 0.00e+0
Monocyte cd11b 3.262 0.00e+0 0.00e+0
Monocyte icos 3.108 0.00e+0 0.00e+0
Monocyte cd169 2.412 0.00e+0 0.00e+0
Monocyte ly6c 1.066 0.00e+0 0.00e+0
Monocyte cd127 0.974 0.00e+0 0.00e+0
Monocyte cd106 0.645 0.00e+0 0.00e+0
Monocyte sirpa 0.618 0.00e+0 0.00e+0
Monocyte cd45 0.397 0.00e+0 0.00e+0
Monocyte gfp 0.285 7.76e-288 7.76e-288
Macrophage cd106 2.862 0.00e+0 0.00e+0
Macrophage cd169 2.418 0.00e+0 0.00e+0
Macrophage mhcii 1.818 0.00e+0 0.00e+0
Macrophage pdl1 1.580 0.00e+0 0.00e+0
Macrophage igm 1.127 0.00e+0 0.00e+0
Macrophage cd48 0.715 0.00e+0 0.00e+0
Macrophage cd86 0.603 0.00e+0 0.00e+0
Macrophage cd38 0.540 0.00e+0 0.00e+0
Macrophage sirpa 0.505 0.00e+0 0.00e+0
Macrophage lepr 0.262 2.66e-55 2.42e-55
Macrophage tie2 1.180 1.17e-53 1.17e-53
Tumor/Malignant cell pdl1 2.361 0.00e+0 0.00e+0
Tumor/Malignant cell cd127 1.739 0.00e+0 0.00e+0
Tumor/Malignant cell cd106 1.547 0.00e+0 0.00e+0
Tumor/Malignant cell icos 1.182 0.00e+0 0.00e+0
Tumor/Malignant cell cd86 0.998 0.00e+0 0.00e+0
Tumor/Malignant cell cd49d 0.922 0.00e+0 0.00e+0
Tumor/Malignant cell cd48 0.819 0.00e+0 0.00e+0
Tumor/Malignant cell cd11b 0.738 0.00e+0 0.00e+0
Tumor/Malignant cell cd47 0.648 0.00e+0 0.00e+0
Tumor/Malignant cell cd41 0.543 0.00e+0 0.00e+0
Tumor/Malignant cell cd71 0.508 0.00e+0 0.00e+0
Tumor/Malignant cell gfp 0.497 0.00e+0 0.00e+0
Tumor/Malignant cell cd90 0.496 0.00e+0 0.00e+0