scAtria single-cell spatial atlas resource

CRC_41986711 · CosMx SMI / NanoString SMI

CRC_41986711 · CRC_41986711__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

251-300 of 352
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

350 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
CRC_41986711__CosMx_SMI__FOV_331 Large intestine 2,263 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_332 Large intestine 1,688 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_333 Large intestine 1,948 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_334 Large intestine 2,451 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_335 Large intestine 2,488 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_336 Large intestine 1,563 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_337 Large intestine 349 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_338 Large intestine 2,274 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_339 Large intestine 3,058 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_34 Large intestine 529 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_340 Large intestine 2,321 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_341 Large intestine 117 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_342 Large intestine 247 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_343 Large intestine 656 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_344 Large intestine 947 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_345 Large intestine 638 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_346 Large intestine 1,226 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_347 Large intestine 1,631 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_348 Large intestine 2,338 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_349 Large intestine 1,108 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_35 Large intestine 2,002 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_350 Large intestine 2,437 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_351 Large intestine 2,575 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_352 Large intestine 2,375 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_353 Large intestine 117 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_354 Large intestine 268 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_355 Large intestine 146 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_359 Large intestine 190 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_36 Large intestine 2,049 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_360 Large intestine 457 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_361 Large intestine 1,455 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_362 Large intestine 3,284 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_363 Large intestine 2,379 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_364 Large intestine 1,713 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_37 Large intestine 4,334 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_38 Large intestine 1,831 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_39 Large intestine 795 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_4 Large intestine 181 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_40 Large intestine 3,206 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_41 Large intestine 19 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_42 Large intestine 2,111 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_43 Large intestine 2,925 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_44 Large intestine 869 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_45 Large intestine 436 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_46 Large intestine 457 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_47 Large intestine 4,609 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_48 Large intestine 4,675 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_49 Large intestine 199 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_5 Large intestine 256 Ready T1T2T3 View
Manifest Domain summary
CRC_41986711__CosMx_SMI__FOV_50 Large intestine 281 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

350 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
CRC_41986711__CosMx_SMI__FOV_331 Large intestine 2,263 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_332 Large intestine 1,688 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_333 Large intestine 1,948 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_334 Large intestine 2,451 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_335 Large intestine 2,488 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_336 Large intestine 1,563 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_337 Large intestine 349 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_338 Large intestine 2,274 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_339 Large intestine 3,058 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_34 Large intestine 529 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_340 Large intestine 2,321 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_341 Large intestine 117 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_342 Large intestine 247 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_343 Large intestine 656 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_344 Large intestine 947 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_345 Large intestine 638 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_346 Large intestine 1,226 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_347 Large intestine 1,631 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_348 Large intestine 2,338 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_349 Large intestine 1,108 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_35 Large intestine 2,002 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_350 Large intestine 2,437 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_351 Large intestine 2,575 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_352 Large intestine 2,375 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_353 Large intestine 117 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_354 Large intestine 268 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_355 Large intestine 146 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_359 Large intestine 190 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_36 Large intestine 2,049 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_360 Large intestine 457 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_361 Large intestine 1,455 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_362 Large intestine 3,284 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_363 Large intestine 2,379 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_364 Large intestine 1,713 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_37 Large intestine 4,334 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_38 Large intestine 1,831 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_39 Large intestine 795 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_4 Large intestine 181 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_40 Large intestine 3,206 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_41 Large intestine 19 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_42 Large intestine 2,111 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_43 Large intestine 2,925 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_44 Large intestine 869 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_45 Large intestine 436 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_46 Large intestine 457 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_47 Large intestine 4,609 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_48 Large intestine 4,675 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_49 Large intestine 199 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_5 Large intestine 256 Ready T1T2T3 View
Manifest Pair summary
CRC_41986711__CosMx_SMI__FOV_50 Large intestine 281 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

350 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
CRC_41986711__CosMx_SMI__FOV_331 Large intestine 2,263 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_332 Large intestine 1,688 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_333 Large intestine 1,948 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_334 Large intestine 2,451 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_335 Large intestine 2,488 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_336 Large intestine 1,563 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_337 Large intestine 349 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_338 Large intestine 2,274 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_339 Large intestine 3,058 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_34 Large intestine 529 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_340 Large intestine 2,321 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_341 Large intestine 117 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_342 Large intestine 247 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_343 Large intestine 656 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_344 Large intestine 947 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_345 Large intestine 638 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_346 Large intestine 1,226 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_347 Large intestine 1,631 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_348 Large intestine 2,338 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_349 Large intestine 1,108 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_35 Large intestine 2,002 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_350 Large intestine 2,437 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_351 Large intestine 2,575 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_352 Large intestine 2,375 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_353 Large intestine 117 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_354 Large intestine 268 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_355 Large intestine 146 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_359 Large intestine 190 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_36 Large intestine 2,049 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_360 Large intestine 457 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_361 Large intestine 1,455 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_362 Large intestine 3,284 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_363 Large intestine 2,379 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_364 Large intestine 1,713 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_37 Large intestine 4,334 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_38 Large intestine 1,831 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_39 Large intestine 795 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_4 Large intestine 181 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_40 Large intestine 3,206 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_41 Large intestine 19 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_42 Large intestine 2,111 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_43 Large intestine 2,925 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_44 Large intestine 869 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_45 Large intestine 436 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_46 Large intestine 457 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_47 Large intestine 4,609 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_48 Large intestine 4,675 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_49 Large intestine 199 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_5 Large intestine 256 Ready T1T2T3 View
Manifest Topology summary
CRC_41986711__CosMx_SMI__FOV_50 Large intestine 281 Ready T1T2T3 View
Manifest Topology summary