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scAtria
single-cell spatial atlas resource
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Bruker CosMx 6k FFPE showcase
Bruker CosMx 6k FFPE showcase ยท CosMx6k_Bruker__CosMx_SMI
CosMx SMI / NanoString SMI
Spatial transcriptomics
Curated Tiered
Overview
Cell ontology
Samples
In situ
Spatial analyses
In situ
In situ
Spatial plot
CosMx6k_Bruker__CosMx_SMI__CosMxFrontalCortex6k_Bruker
Column: cell_type_tier_3
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Current sample
Cell-type composition
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Color source
Single-cell column
Color cells by
cell_type
cell_type_source_long
cell_type_source_columns_used
cell_type_source_primary
cell_type_source_status
cell_type_tier_1
cell_type_tier_2
cell_type_tier_3
cell_type_tier_4
cell_type_dictionary_key
Point cap
1,000
2,500
5,000
10,000
25,000
50,000
Palette
Atrium
Viridis
Harbor
Ember
Point size
7
Legend
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