scAtria single-cell spatial atlas resource

HGSC_39179931 · CosMx SMI / NanoString SMI

HGSC_39179931 · HGSC_39179931__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

51-100 of 166
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

162 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
HGSC_39179931__CosMx_SMI__SMI6K_2_F00030 Ovary 1,875 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00031 Ovary 1,045 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00032 Ovary 1,413 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00033 Ovary 1,967 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00034 Ovary 1,190 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00035 Ovary 789 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00036 Ovary 2,012 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00037 Ovary 3,113 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00038 Peritoneum 3,157 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00039 Ovary 330 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00040 Ovary 1,359 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00041 Ovary 1,185 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00042 Ovary 2,189 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00043 Ovary 1,836 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00044 Ovary 1,236 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00045 Ovary 2,285 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F001 Ovary 5,660 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F002 Ovary 8,821 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F003 Ovary 2,881 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F004 Peritoneum 3,145 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F005 Ovary 2,187 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F006 Ovary 5,295 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F007 Peritoneum 4,117 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F008 Peritoneum 2,428 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F009 Peritoneum 2,944 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F010 Peritoneum 5,971 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F011 Peritoneum 6,990 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F012 Ovary 8,874 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F013 Ovary 2,765 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F014 Ovary 5,944 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F015 Ovary 4,052 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F016 Ovary 4,218 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F018 Peritoneum 7,549 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F019 Peritoneum 10,474 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F020 Peritoneum 7,413 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F021 Peritoneum 5,338 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F022 Peritoneum 3,834 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F023 Ovary 2,029 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T10_F024 Ovary 4,085 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F001 Ovary 2,212 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F002 Ovary 3,267 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F003 Peritoneum 3,783 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F004 Ovary 8,088 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F005 Peritoneum 3,232 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F006 Peritoneum 6,437 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F007 Ovary 3,701 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F008 Ovary 2,967 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F009 Ovary 4,311 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F010 Ovary 1,161 Ready T1T2T3 View
Manifest Domain summary
HGSC_39179931__CosMx_SMI__SMI_T11_F011 Ovary 3,876 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

162 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
HGSC_39179931__CosMx_SMI__SMI6K_2_F00030 Ovary 1,875 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00031 Ovary 1,045 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00032 Ovary 1,413 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00033 Ovary 1,967 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00034 Ovary 1,190 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00035 Ovary 789 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00036 Ovary 2,012 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00037 Ovary 3,113 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00038 Peritoneum 3,157 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00039 Ovary 330 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00040 Ovary 1,359 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00041 Ovary 1,185 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00042 Ovary 2,189 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00043 Ovary 1,836 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00044 Ovary 1,236 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00045 Ovary 2,285 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F001 Ovary 5,660 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F002 Ovary 8,821 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F003 Ovary 2,881 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F004 Peritoneum 3,145 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F005 Ovary 2,187 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F006 Ovary 5,295 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F007 Peritoneum 4,117 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F008 Peritoneum 2,428 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F009 Peritoneum 2,944 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F010 Peritoneum 5,971 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F011 Peritoneum 6,990 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F012 Ovary 8,874 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F013 Ovary 2,765 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F014 Ovary 5,944 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F015 Ovary 4,052 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F016 Ovary 4,218 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F018 Peritoneum 7,549 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F019 Peritoneum 10,474 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F020 Peritoneum 7,413 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F021 Peritoneum 5,338 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F022 Peritoneum 3,834 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F023 Ovary 2,029 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T10_F024 Ovary 4,085 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F001 Ovary 2,212 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F002 Ovary 3,267 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F003 Peritoneum 3,783 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F004 Ovary 8,088 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F005 Peritoneum 3,232 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F006 Peritoneum 6,437 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F007 Ovary 3,701 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F008 Ovary 2,967 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F009 Ovary 4,311 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F010 Ovary 1,161 Ready T1T2T3 View
Manifest Pair summary
HGSC_39179931__CosMx_SMI__SMI_T11_F011 Ovary 3,876 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

162 ready Open page
Sample Organ Cells Graph ?Ready means a sample-level spatial graph exists for this published module output; it is not a biological quality score. Tiers ?Ready tier badges show which ontology levels have usable module outputs. Stale or missing tiers are not counted as ready. Open Downloads ?Manifest downloads describe sample-level availability. Module downloads contain the selected module result table, usually scoped to the first ready tier.
HGSC_39179931__CosMx_SMI__SMI6K_2_F00030 Ovary 1,875 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00031 Ovary 1,045 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00032 Ovary 1,413 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00033 Ovary 1,967 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00034 Ovary 1,190 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00035 Ovary 789 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00036 Ovary 2,012 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00037 Ovary 3,113 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00038 Peritoneum 3,157 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00039 Ovary 330 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00040 Ovary 1,359 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00041 Ovary 1,185 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00042 Ovary 2,189 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00043 Ovary 1,836 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00044 Ovary 1,236 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI6K_2_F00045 Ovary 2,285 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F001 Ovary 5,660 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F002 Ovary 8,821 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F003 Ovary 2,881 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F004 Peritoneum 3,145 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F005 Ovary 2,187 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F006 Ovary 5,295 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F007 Peritoneum 4,117 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F008 Peritoneum 2,428 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F009 Peritoneum 2,944 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F010 Peritoneum 5,971 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F011 Peritoneum 6,990 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F012 Ovary 8,874 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F013 Ovary 2,765 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F014 Ovary 5,944 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F015 Ovary 4,052 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F016 Ovary 4,218 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F018 Peritoneum 7,549 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F019 Peritoneum 10,474 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F020 Peritoneum 7,413 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F021 Peritoneum 5,338 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F022 Peritoneum 3,834 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F023 Ovary 2,029 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T10_F024 Ovary 4,085 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F001 Ovary 2,212 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F002 Ovary 3,267 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F003 Peritoneum 3,783 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F004 Ovary 8,088 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F005 Peritoneum 3,232 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F006 Peritoneum 6,437 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F007 Ovary 3,701 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F008 Ovary 2,967 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F009 Ovary 4,311 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F010 Ovary 1,161 Ready T1T2T3 View
Manifest Topology summary
HGSC_39179931__CosMx_SMI__SMI_T11_F011 Ovary 3,876 Ready T1T2T3 View
Manifest Topology summary