scAtria single-cell spatial atlas resource

HGSC_39179931 · CosMx SMI / NanoString SMI

HGSC_39179931 · HGSC_39179931__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered PMID 39179931 DOI 10.1038/s41590-024-01943-5
Samples

Sample manifest

1-50 of 166
Sample Organ ?When a dataset spans multiple organs, the fraction shows how many samples map to each organ. Disease state Disease detail Cells Curation Spatial modules
HGSC_39179931__CosMx_SMI__HGSC1 Ovary Primary cancer High-grade serous carcinoma 542,559 Curated NA
HGSC_39179931__CosMx_SMI__HGSC113 Ovary Primary cancer High-grade serous carcinoma 98,482 Curated NA
HGSC_39179931__CosMx_SMI__HGSC2 Ovary Primary cancer High-grade serous carcinoma 211,472 Curated NA
HGSC_39179931__CosMx_SMI__HGSC8 Ovary Primary cancer High-grade serous carcinoma 294,699 Curated NA
HGSC_39179931__CosMx_SMI__SMI6K_1_F00003 Ovary Primary cancer High-grade serous carcinoma 961 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00006 Ovary Primary cancer High-grade serous carcinoma 652 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00007 Ovary Primary cancer High-grade serous carcinoma 642 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00011 Ovary Primary cancer High-grade serous carcinoma 2,107 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00012 Ovary Primary cancer High-grade serous carcinoma 528 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00016 Ovary Primary cancer High-grade serous carcinoma 2,392 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00027 Ovary Primary cancer High-grade serous carcinoma 798 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00028 Ovary Primary cancer High-grade serous carcinoma 759 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00030 Ovary Primary cancer High-grade serous carcinoma 427 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00032 Ovary Primary cancer High-grade serous carcinoma 573 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00033 Ovary Primary cancer High-grade serous carcinoma 1,854 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00035 Ovary Primary cancer High-grade serous carcinoma 844 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00039 Ovary Primary cancer High-grade serous carcinoma 588 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00041 Ovary Primary cancer High-grade serous carcinoma 1,413 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00044 Ovary Primary cancer High-grade serous carcinoma 642 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00046 Ovary Primary cancer High-grade serous carcinoma 1,123 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_1_F00049 Ovary Primary cancer High-grade serous carcinoma 235 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00001 Ovary Primary cancer High-grade serous carcinoma 1,840 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00002 Ovary Primary cancer High-grade serous carcinoma 1,454 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00003 Ovary Primary cancer High-grade serous carcinoma 2,089 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00004 Ovary Primary cancer High-grade serous carcinoma 584 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00005 Ovary Primary cancer High-grade serous carcinoma 1,635 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00006 Ovary Primary cancer High-grade serous carcinoma 3,012 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00007 Ovary Primary cancer High-grade serous carcinoma 2,534 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00008 Ovary Primary cancer High-grade serous carcinoma 2,067 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00009 Ovary Primary cancer High-grade serous carcinoma 2,089 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00010 Ovary Primary cancer High-grade serous carcinoma 770 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00011 Ovary Primary cancer High-grade serous carcinoma 1,238 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00012 Ovary Primary cancer High-grade serous carcinoma 1,545 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00013 Ovary Primary cancer High-grade serous carcinoma 1,321 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00014 Ovary Primary cancer High-grade serous carcinoma 773 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00015 Ovary Primary cancer High-grade serous carcinoma 506 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00016 Ovary Primary cancer High-grade serous carcinoma 1,326 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00017 Ovary Primary cancer High-grade serous carcinoma 756 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00018 Ovary Primary cancer High-grade serous carcinoma 755 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00019 Ovary Primary cancer High-grade serous carcinoma 2,221 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00020 Ovary Primary cancer High-grade serous carcinoma 1,784 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00021 Ovary Primary cancer High-grade serous carcinoma 1,801 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00022 Ovary Primary cancer High-grade serous carcinoma 1,037 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00023 Ovary Primary cancer High-grade serous carcinoma 782 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00024 Ovary Primary cancer High-grade serous carcinoma 1,531 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00025 Ovary Primary cancer High-grade serous carcinoma 1,751 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00026 Ovary Primary cancer High-grade serous carcinoma 1,664 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00027 Ovary Primary cancer High-grade serous carcinoma 1,766 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00028 Ovary Primary cancer High-grade serous carcinoma 470 Curated Domains, Interaction, Topology
HGSC_39179931__CosMx_SMI__SMI6K_2_F00029 Ovary Primary cancer High-grade serous carcinoma 1,201 Curated Domains, Interaction, Topology