scAtria single-cell spatial atlas resource

HNSCC_41616773 PCF discovery cohort

HNSCC_41616773 PCF discovery cohort · HNSCCDiscovery_41616773__PCF_CODEX

PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated Tiered PMID 41616773 DOI 10.1016/j.ccell.2026.01.003
Overview Curated
Samples390 samples
Cells1,556,569
DEG analysesNot ready
Spatial analysesPartial 293/390 samples
AnnotationCurated tiered
Organs
Head and neck 189 Lymph node metastasis 138 Lymphoid tissue 63
Reference
Lymph node colonization induces tissue remodeling via immunosuppressive fibroblast-myeloid cell niches supporting metastatic tolerance
Haist M, Baertsch MA, Reticker-Flynn NE, Lu G, Kempchen TN, Chu P, Vazquez G, Chen H et al.
Cancer Cell | 2026
PMID 41616773 · DOI 10.1016/j.ccell.2026.01.003
PubMed PMID 41616773 DOI 10.1016/j.ccell.2026.01.003
Related datasets
HNSCC_41616773 · Other ST Other ST | Spatial transcriptomics | 137 samples | 1,156,046 cells HNSCC_41616773 PCF healthy lymph node cohort PCF / CODEX / PhenoCycler Fusion | Spatial proteomics | 51 samples | 1,238,209 cells HNSCC_41616773 PCF validation cohort PCF / CODEX / PhenoCycler Fusion | Spatial proteomics | 34 samples | 745,842 cells