scAtria single-cell spatial atlas resource

HNSCC_41616773 PCF healthy lymph node cohort

HNSCC_41616773 PCF healthy lymph node cohort · HNSCCHealthyLN_41616773__PCF_CODEX

PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-50 of 51
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

6 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
HNSCCHealthyLN_41616773__PCF_CODEX__A10 Lymphoid tissue 32,551 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A12 Lymphoid tissue 6 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A13 Lymphoid tissue 23,749 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A4 Lymphoid tissue 924 Ready T1T2T3 View
Manifest Domain summary
HNSCCHealthyLN_41616773__PCF_CODEX__A5 Lymphoid tissue 8,022 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A6 Lymphoid tissue 33,009 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A7 Lymphoid tissue 3,088 Ready T1T2T3 View
Manifest Domain summary
HNSCCHealthyLN_41616773__PCF_CODEX__B10 Lymphoid tissue 38,434 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B11 Lymphoid tissue 41,484 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B12 Lymphoid tissue 14,888 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B13 Lymphoid tissue 41,224 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B4 Lymphoid tissue 10,223 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B5 Lymphoid tissue 24,616 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B6 Lymphoid tissue 24,826 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B7 Lymphoid tissue 36,065 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C10 Lymphoid tissue 42,562 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C11 Lymphoid tissue 36,993 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C12 Lymphoid tissue 25,253 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C13 Lymphoid tissue 18,777 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C4 Lymphoid tissue 3,710 Ready T1T2T3 View
Manifest Domain summary
HNSCCHealthyLN_41616773__PCF_CODEX__C5 Lymphoid tissue 15,087 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C6 Lymphoid tissue 26,902 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C7 Lymphoid tissue 35,406 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D10 Lymphoid tissue 27,557 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D11 Lymphoid tissue 15,500 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D12 Lymphoid tissue 33,905 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D13 Lymphoid tissue 49,332 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D4 Lymphoid tissue 45,582 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D5 Lymphoid tissue 44,886 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D6 Lymphoid tissue 26,243 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E11 Lymphoid tissue 6,126 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E12 Lymphoid tissue 25,299 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E13 Lymphoid tissue 31,833 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E3 Lymphoid tissue 5,697 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E4 Lymphoid tissue 32,802 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E5 Lymphoid tissue 25,665 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E6 Lymphoid tissue 20,311 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F11 Lymphoid tissue 546 Ready T1T2T3 View
Manifest Domain summary
HNSCCHealthyLN_41616773__PCF_CODEX__F12 Lymphoid tissue 20,339 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F13 Lymphoid tissue 24,638 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F3 Lymphoid tissue 22,145 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F4 Lymphoid tissue 38,942 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F5 Lymphoid tissue 24,800 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F6 Lymphoid tissue 35,639 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G11 Lymphoid tissue 801 Ready T1T2T3 View
Manifest Domain summary
HNSCCHealthyLN_41616773__PCF_CODEX__G12 Lymphoid tissue 2,709 Ready T1T2T3 View
Manifest Domain summary
HNSCCHealthyLN_41616773__PCF_CODEX__G13 Lymphoid tissue 31,554 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G3 Lymphoid tissue 32,057 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G4 Lymphoid tissue 31,355 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G5 Lymphoid tissue 29,071 NA T1T2T3 View NA
Interaction Propensity

Cell-type contact samples

6 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
HNSCCHealthyLN_41616773__PCF_CODEX__A10 Lymphoid tissue 32,551 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A12 Lymphoid tissue 6 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A13 Lymphoid tissue 23,749 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A4 Lymphoid tissue 924 Ready T1T2T3 View
Manifest Pair summary
HNSCCHealthyLN_41616773__PCF_CODEX__A5 Lymphoid tissue 8,022 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A6 Lymphoid tissue 33,009 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A7 Lymphoid tissue 3,088 Ready T1T2T3 View
Manifest Pair summary
HNSCCHealthyLN_41616773__PCF_CODEX__B10 Lymphoid tissue 38,434 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B11 Lymphoid tissue 41,484 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B12 Lymphoid tissue 14,888 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B13 Lymphoid tissue 41,224 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B4 Lymphoid tissue 10,223 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B5 Lymphoid tissue 24,616 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B6 Lymphoid tissue 24,826 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B7 Lymphoid tissue 36,065 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C10 Lymphoid tissue 42,562 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C11 Lymphoid tissue 36,993 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C12 Lymphoid tissue 25,253 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C13 Lymphoid tissue 18,777 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C4 Lymphoid tissue 3,710 Ready T1T2T3 View
Manifest Pair summary
HNSCCHealthyLN_41616773__PCF_CODEX__C5 Lymphoid tissue 15,087 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C6 Lymphoid tissue 26,902 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C7 Lymphoid tissue 35,406 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D10 Lymphoid tissue 27,557 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D11 Lymphoid tissue 15,500 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D12 Lymphoid tissue 33,905 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D13 Lymphoid tissue 49,332 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D4 Lymphoid tissue 45,582 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D5 Lymphoid tissue 44,886 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D6 Lymphoid tissue 26,243 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E11 Lymphoid tissue 6,126 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E12 Lymphoid tissue 25,299 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E13 Lymphoid tissue 31,833 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E3 Lymphoid tissue 5,697 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E4 Lymphoid tissue 32,802 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E5 Lymphoid tissue 25,665 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E6 Lymphoid tissue 20,311 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F11 Lymphoid tissue 546 Ready T1T2T3 View
Manifest Pair summary
HNSCCHealthyLN_41616773__PCF_CODEX__F12 Lymphoid tissue 20,339 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F13 Lymphoid tissue 24,638 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F3 Lymphoid tissue 22,145 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F4 Lymphoid tissue 38,942 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F5 Lymphoid tissue 24,800 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F6 Lymphoid tissue 35,639 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G11 Lymphoid tissue 801 Ready T1T2T3 View
Manifest Pair summary
HNSCCHealthyLN_41616773__PCF_CODEX__G12 Lymphoid tissue 2,709 Ready T1T2T3 View
Manifest Pair summary
HNSCCHealthyLN_41616773__PCF_CODEX__G13 Lymphoid tissue 31,554 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G3 Lymphoid tissue 32,057 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G4 Lymphoid tissue 31,355 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G5 Lymphoid tissue 29,071 NA T1T2T3 View NA
Network Topology

Graph-topology samples

6 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
HNSCCHealthyLN_41616773__PCF_CODEX__A10 Lymphoid tissue 32,551 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A12 Lymphoid tissue 6 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A13 Lymphoid tissue 23,749 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A4 Lymphoid tissue 924 Ready T1T2T3 View
Manifest Topology summary
HNSCCHealthyLN_41616773__PCF_CODEX__A5 Lymphoid tissue 8,022 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A6 Lymphoid tissue 33,009 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__A7 Lymphoid tissue 3,088 Ready T1T2T3 View
Manifest Topology summary
HNSCCHealthyLN_41616773__PCF_CODEX__B10 Lymphoid tissue 38,434 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B11 Lymphoid tissue 41,484 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B12 Lymphoid tissue 14,888 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B13 Lymphoid tissue 41,224 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B4 Lymphoid tissue 10,223 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B5 Lymphoid tissue 24,616 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B6 Lymphoid tissue 24,826 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__B7 Lymphoid tissue 36,065 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C10 Lymphoid tissue 42,562 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C11 Lymphoid tissue 36,993 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C12 Lymphoid tissue 25,253 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C13 Lymphoid tissue 18,777 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C4 Lymphoid tissue 3,710 Ready T1T2T3 View
Manifest Topology summary
HNSCCHealthyLN_41616773__PCF_CODEX__C5 Lymphoid tissue 15,087 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C6 Lymphoid tissue 26,902 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__C7 Lymphoid tissue 35,406 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D10 Lymphoid tissue 27,557 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D11 Lymphoid tissue 15,500 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D12 Lymphoid tissue 33,905 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D13 Lymphoid tissue 49,332 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D4 Lymphoid tissue 45,582 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D5 Lymphoid tissue 44,886 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__D6 Lymphoid tissue 26,243 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E11 Lymphoid tissue 6,126 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E12 Lymphoid tissue 25,299 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E13 Lymphoid tissue 31,833 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E3 Lymphoid tissue 5,697 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E4 Lymphoid tissue 32,802 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E5 Lymphoid tissue 25,665 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__E6 Lymphoid tissue 20,311 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F11 Lymphoid tissue 546 Ready T1T2T3 View
Manifest Topology summary
HNSCCHealthyLN_41616773__PCF_CODEX__F12 Lymphoid tissue 20,339 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F13 Lymphoid tissue 24,638 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F3 Lymphoid tissue 22,145 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F4 Lymphoid tissue 38,942 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F5 Lymphoid tissue 24,800 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__F6 Lymphoid tissue 35,639 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G11 Lymphoid tissue 801 Ready T1T2T3 View
Manifest Topology summary
HNSCCHealthyLN_41616773__PCF_CODEX__G12 Lymphoid tissue 2,709 Ready T1T2T3 View
Manifest Topology summary
HNSCCHealthyLN_41616773__PCF_CODEX__G13 Lymphoid tissue 31,554 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G3 Lymphoid tissue 32,057 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G4 Lymphoid tissue 31,355 NA T1T2T3 View NA
HNSCCHealthyLN_41616773__PCF_CODEX__G5 Lymphoid tissue 29,071 NA T1T2T3 View NA