scAtria single-cell spatial atlas resource

HNSCC_41616773 PCF validation cohort

HNSCC_41616773 PCF validation cohort · HNSCCValidation_41616773__PCF_CODEX

PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-34 of 34
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

2 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
HNSCCValidation_41616773__PCF_CODEX__A11 Lymphoid tissue 37,006 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A2 Lymph node metastasis 13,294 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A3 Lymphoid tissue 31,259 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A8 Head and neck 13,158 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A9 Lymphoid tissue 29,727 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B2 Lymph node metastasis 19,794 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B3 Lymphoid tissue 35,501 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B8 Head and neck 8,169 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B9 Lymph node metastasis 13,775 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C1 Head and neck 3,525 Ready T1T2T3 View
Manifest Domain summary
HNSCCValidation_41616773__PCF_CODEX__C2 Lymph node metastasis 6,444 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C3 Lymphoid tissue 33,510 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C8 Head and neck 16,816 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C9 Lymph node metastasis 10,903 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D1 Head and neck 14,465 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D2 Lymphoid tissue 42,243 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D3 Lymphoid tissue 37,590 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D8 Head and neck 10,294 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D9 Head and neck 9,945 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E1 Head and neck 9,499 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E10 Lymphoid tissue 22,094 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E2 Lymph node metastasis 26,185 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E8 Lymphoid tissue 45,890 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E9 Head and neck 11,500 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F1 Head and neck 13,351 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F10 Lymph node metastasis 38,658 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F2 Lymphoid tissue 36,279 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F8 Lymphoid tissue 29,499 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F9 Lymph node metastasis 23,608 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G1 Lymph node metastasis 3,714 Ready T1T2T3 View
Manifest Domain summary
HNSCCValidation_41616773__PCF_CODEX__G10 Lymph node metastasis 19,042 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G2 Lymphoid tissue 23,018 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G8 Lymphoid tissue 38,933 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G9 Head and neck 17,154 NA T1T2T3 View NA
Interaction Propensity

Cell-type contact samples

2 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
HNSCCValidation_41616773__PCF_CODEX__A11 Lymphoid tissue 37,006 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A2 Lymph node metastasis 13,294 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A3 Lymphoid tissue 31,259 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A8 Head and neck 13,158 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A9 Lymphoid tissue 29,727 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B2 Lymph node metastasis 19,794 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B3 Lymphoid tissue 35,501 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B8 Head and neck 8,169 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B9 Lymph node metastasis 13,775 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C1 Head and neck 3,525 Ready T1T2T3 View
Manifest Pair summary
HNSCCValidation_41616773__PCF_CODEX__C2 Lymph node metastasis 6,444 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C3 Lymphoid tissue 33,510 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C8 Head and neck 16,816 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C9 Lymph node metastasis 10,903 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D1 Head and neck 14,465 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D2 Lymphoid tissue 42,243 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D3 Lymphoid tissue 37,590 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D8 Head and neck 10,294 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D9 Head and neck 9,945 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E1 Head and neck 9,499 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E10 Lymphoid tissue 22,094 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E2 Lymph node metastasis 26,185 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E8 Lymphoid tissue 45,890 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E9 Head and neck 11,500 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F1 Head and neck 13,351 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F10 Lymph node metastasis 38,658 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F2 Lymphoid tissue 36,279 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F8 Lymphoid tissue 29,499 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F9 Lymph node metastasis 23,608 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G1 Lymph node metastasis 3,714 Ready T1T2T3 View
Manifest Pair summary
HNSCCValidation_41616773__PCF_CODEX__G10 Lymph node metastasis 19,042 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G2 Lymphoid tissue 23,018 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G8 Lymphoid tissue 38,933 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G9 Head and neck 17,154 NA T1T2T3 View NA
Network Topology

Graph-topology samples

2 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
HNSCCValidation_41616773__PCF_CODEX__A11 Lymphoid tissue 37,006 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A2 Lymph node metastasis 13,294 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A3 Lymphoid tissue 31,259 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A8 Head and neck 13,158 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__A9 Lymphoid tissue 29,727 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B2 Lymph node metastasis 19,794 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B3 Lymphoid tissue 35,501 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B8 Head and neck 8,169 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__B9 Lymph node metastasis 13,775 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C1 Head and neck 3,525 Ready T1T2T3 View
Manifest Topology summary
HNSCCValidation_41616773__PCF_CODEX__C2 Lymph node metastasis 6,444 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C3 Lymphoid tissue 33,510 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C8 Head and neck 16,816 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__C9 Lymph node metastasis 10,903 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D1 Head and neck 14,465 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D2 Lymphoid tissue 42,243 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D3 Lymphoid tissue 37,590 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D8 Head and neck 10,294 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__D9 Head and neck 9,945 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E1 Head and neck 9,499 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E10 Lymphoid tissue 22,094 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E2 Lymph node metastasis 26,185 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E8 Lymphoid tissue 45,890 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__E9 Head and neck 11,500 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F1 Head and neck 13,351 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F10 Lymph node metastasis 38,658 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F2 Lymphoid tissue 36,279 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F8 Lymphoid tissue 29,499 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__F9 Lymph node metastasis 23,608 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G1 Lymph node metastasis 3,714 Ready T1T2T3 View
Manifest Topology summary
HNSCCValidation_41616773__PCF_CODEX__G10 Lymph node metastasis 19,042 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G2 Lymphoid tissue 23,018 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G8 Lymphoid tissue 38,933 NA T1T2T3 View NA
HNSCCValidation_41616773__PCF_CODEX__G9 Head and neck 17,154 NA T1T2T3 View NA