scAtria single-cell spatial atlas resource

IBD_42049732 · CosMx SMI / NanoString SMI

IBD_42049732 · IBD_42049732__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-34 of 34
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

34 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
IBD_42049732__CosMx_SMI__FOV_1 Large intestine 1,027 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_10 Large intestine 284 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_11 Large intestine 965 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_12 Large intestine 1,209 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_13 Large intestine 449 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_14 Large intestine 379 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_15 Large intestine 2,086 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_16 Large intestine 1,087 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_17 Large intestine 775 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_18 Large intestine 253 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_19 Large intestine 1,209 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_2 Large intestine 1,777 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_20 Large intestine 2,485 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_21 Large intestine 1,024 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_22 Large intestine 160 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_23 Large intestine 477 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_24 Large intestine 1,991 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_25 Large intestine 1,786 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_26 Large intestine 1,171 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_27 Large intestine 1,183 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_28 Large intestine 364 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_29 Large intestine 1,149 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_3 Large intestine 503 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_30 Large intestine 2,048 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_31 Large intestine 1,768 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_32 Large intestine 1,076 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_33 Large intestine 1,737 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_34 Large intestine 1,339 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_4 Large intestine 1,576 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_5 Large intestine 2,924 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_6 Large intestine 1,378 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_7 Large intestine 2,438 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_8 Large intestine 1,453 Ready T1T2T3 View
Manifest Domain summary
IBD_42049732__CosMx_SMI__FOV_9 Large intestine 1,504 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

34 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
IBD_42049732__CosMx_SMI__FOV_1 Large intestine 1,027 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_10 Large intestine 284 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_11 Large intestine 965 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_12 Large intestine 1,209 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_13 Large intestine 449 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_14 Large intestine 379 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_15 Large intestine 2,086 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_16 Large intestine 1,087 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_17 Large intestine 775 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_18 Large intestine 253 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_19 Large intestine 1,209 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_2 Large intestine 1,777 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_20 Large intestine 2,485 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_21 Large intestine 1,024 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_22 Large intestine 160 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_23 Large intestine 477 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_24 Large intestine 1,991 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_25 Large intestine 1,786 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_26 Large intestine 1,171 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_27 Large intestine 1,183 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_28 Large intestine 364 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_29 Large intestine 1,149 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_3 Large intestine 503 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_30 Large intestine 2,048 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_31 Large intestine 1,768 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_32 Large intestine 1,076 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_33 Large intestine 1,737 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_34 Large intestine 1,339 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_4 Large intestine 1,576 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_5 Large intestine 2,924 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_6 Large intestine 1,378 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_7 Large intestine 2,438 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_8 Large intestine 1,453 Ready T1T2T3 View
Manifest Pair summary
IBD_42049732__CosMx_SMI__FOV_9 Large intestine 1,504 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

34 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
IBD_42049732__CosMx_SMI__FOV_1 Large intestine 1,027 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_10 Large intestine 284 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_11 Large intestine 965 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_12 Large intestine 1,209 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_13 Large intestine 449 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_14 Large intestine 379 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_15 Large intestine 2,086 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_16 Large intestine 1,087 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_17 Large intestine 775 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_18 Large intestine 253 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_19 Large intestine 1,209 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_2 Large intestine 1,777 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_20 Large intestine 2,485 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_21 Large intestine 1,024 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_22 Large intestine 160 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_23 Large intestine 477 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_24 Large intestine 1,991 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_25 Large intestine 1,786 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_26 Large intestine 1,171 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_27 Large intestine 1,183 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_28 Large intestine 364 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_29 Large intestine 1,149 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_3 Large intestine 503 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_30 Large intestine 2,048 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_31 Large intestine 1,768 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_32 Large intestine 1,076 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_33 Large intestine 1,737 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_34 Large intestine 1,339 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_4 Large intestine 1,576 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_5 Large intestine 2,924 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_6 Large intestine 1,378 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_7 Large intestine 2,438 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_8 Large intestine 1,453 Ready T1T2T3 View
Manifest Topology summary
IBD_42049732__CosMx_SMI__FOV_9 Large intestine 1,504 Ready T1T2T3 View
Manifest Topology summary